Package: psbcSpeedUp 2.0.7
psbcSpeedUp: Penalized Semiparametric Bayesian Cox Models
Algorithms to speed up the Bayesian Lasso Cox model (Lee et al., Int J Biostat, 2011 <doi:10.2202/1557-4679.1301>) and the Bayesian Lasso Cox with mandatory variables (Zucknick et al. Biometrical J, 2015 <doi:10.1002/bimj.201400160>).
Authors:
psbcSpeedUp_2.0.7.tar.gz
psbcSpeedUp_2.0.7.tar.gz(r-4.5-noble)psbcSpeedUp_2.0.7.tar.gz(r-4.4-noble)
psbcSpeedUp_2.0.7.tgz(r-4.4-emscripten)
psbcSpeedUp.pdf |psbcSpeedUp.html✨
psbcSpeedUp/json (API)
NEWS
# Install 'psbcSpeedUp' in R: |
install.packages('psbcSpeedUp', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ocbe-uio/psbcspeedup/issues
- exampleData - Simulated data set
Last updated 5 months agofrom:49232ff167. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 29 2024 |
R-4.5-linux-x86_64 | OK | Nov 29 2024 |
Exports:plotBrierpsbcSpeedUp
Dependencies:backportsbase64encbslibcachemcheckmatecliclustercmprskcodetoolscolorspacecpp11crayondata.tablediagramdigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforcatsforeachforeignFormulafsfuturefuture.applygenericsGGallyggplot2ggstatsglobalsgluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetsisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelavalifecyclelistenvmagrittrMASSMatrixMatrixModelsmemoisemetsmgcvmimemultcompmunsellmvtnormnlmennetnumDerivparallellypatchworkpillarpkgconfigplotrixplyrpolsplineprettyunitsprodlimprogressprogressrPublishpurrrquantregR6rangerrappdirsRColorBrewerRcppRcppArmadilloRcppEigenriskRegressionrlangrmarkdownrmsrpartrstudioapisandwichsassscalesshapeSparseMSQUAREMstringistringrsurvivalTH.datatibbletidyrtidyselecttimeregtinytexutf8vctrsviridisviridisLitewithrxfunxml2yamlzoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
coef method for class 'psbcSpeedUp' | coef.psbcSpeedUp |
Simulated data set | exampleData |
create a plot of estimated coefficients | plot.psbcSpeedUp |
Time-dependent Brier scores | plotBrier |
Predict survival risk | predict.psbcSpeedUp |
Function to Fit the Bayesian Cox Lasso Model | psbcSpeedUp-package psbcSpeedUp |