Package: postGGIR 2.4.0.2

Wei Guo

postGGIR: Data Processing after Running 'GGIR' for Accelerometer Data

Generate all necessary R/Rmd/shell files for data processing after running 'GGIR' (v2.4.0) for accelerometer data. In part 1, all csv files in the GGIR output directory were read, transformed and then merged. In part 2, the GGIR output files were checked and summarized in one excel sheet. In part 3, the merged data was cleaned according to the number of valid hours on each night and the number of valid days for each subject. In part 4, the cleaned activity data was imputed by the average Euclidean norm minus one (ENMO) over all the valid days for each subject. Finally, a comprehensive report of data processing was created using Rmarkdown, and the report includes few exploratory plots and multiple commonly used features extracted from minute level actigraphy data.

Authors:Wei Guo [aut, cre], Andrew Leroux [aut], Vadim Zipunnikov [aut], Kathleen Merikangas [aut]

postGGIR_2.4.0.2.tar.gz
postGGIR_2.4.0.2.tar.gz(r-4.5-noble)postGGIR_2.4.0.2.tar.gz(r-4.4-noble)
postGGIR_2.4.0.2.tgz(r-4.4-emscripten)postGGIR_2.4.0.2.tgz(r-4.3-emscripten)
postGGIR.pdf |postGGIR.html
postGGIR/json (API)

# Install 'postGGIR' in R:
install.packages('postGGIR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dora201888/postggir/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

2.20 score 16 scripts 150 downloads 27 exports 170 dependencies

Last updated 3 years agofrom:3c92268036. Checks:OK: 1 NOTE: 1. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-linuxNOTEOct 31 2024

Exports:ActCosinor_long2ActCosinor2ActExtendCosinor_long2ActExtendCosinor2afterggirbin_data2create.postGGIRdata.imputationDataShrinkfragmentation_long2fragmentation2ggir.datatransformggir.summaryIS_long2IS2IV_long2IV2jive.predict2PAfunpheno.plotRA_long2RA2SVDmiss2Time_long2Time2Tvol2wear_flag

Dependencies:abindaccelerometryActCRActFragashbackportsbase64encbitbit64bitopsbootbslibcachemcellrangercheckmatecliclustercodetoolscolorspacecommonmarkcosinorcosinor2cowplotcpp11crayoncubaturedata.tableDBIdenseFLMMdeSolvedigestdoParalleldplyrdvmiscevaluatefansifarverfastmapfdafdsFNNfontawesomeforeachforeignFormulafsgamm4genericsGGIRGGIRreadggplot2glueGPArotationgridExtragrpreggtablehdrcdehexViewhighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvineqirrisobanditeratorsjquerylibjsonlitekableExtrakernlabKernSmoothknitrkslabelinglaterlatticelifecyclelme4locfitlpSolvelubridatemagicmagrittrMASSmatlabMatrixmatrixStatsmclustmemoisemgcvmimeminpack.lmminqamitoolsmnormtmulticoolmunsellmvtnormnlmenloptrnnetnumDerivpbspcaPPpillarpkgconfigpracmaprettyunitsprogresspromisespsychpurrrR.methodsS3R.ooR.utilsR6rainbowrappdirsrbenchmarkRColorBrewerRcppRcppArmadilloRcppEigenRCurlread.gt3xreadxlrefundrematchrJavarlangRLRsimrmarkdownrpartrstudioapisassscalesshinysignalsourcetoolsstringistringrsurveysurvivalsvglitesystemfontstabtibbletidyrtidyselecttimechangetinytextzdbunisensRutf8vctrsviridisviridisLitevroomwithrxfunxlsxxlsxjarsXMLxml2xtableyamlzoo

postGGIR

Rendered frompostGGIR.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2022-01-06
Started: 2021-03-01