Package: popbayes 1.2.0

Nicolas Casajus

popbayes: Bayesian Model to Estimate Population Trends from Counts Series

Infers the trends of one or several animal populations over time from series of counts. It does so by accounting for count precision (provided or inferred based on expert knowledge, e.g. guesstimates), smoothing the population rate of increase over time, and accounting for the maximum demographic potential of species. Inference is carried out in a Bayesian framework. This work is part of the FRB-CESAB working group AfroBioDrivers <https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/afrobiodrivers/>.

Authors:Nicolas Casajus [aut, cre, cph], Roger Pradel [aut]

popbayes_1.2.0.tar.gz
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popbayes.pdf |popbayes.html✨
popbayes/json (API)
NEWS

# Install 'popbayes' in R:
install.packages('popbayes', repos = 'https://cloud.r-project.org')

Bug tracker:https://github.com/frbcesab/popbayes/issues

Pkgdown site:https://frbcesab.github.io

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • garamba - African mammals survey in the Garamba National Park
  • species_info - Species information dataset

On CRAN:

Conda-Forge:

jagscpp

3.00 score 161 downloads 12 exports 40 dependencies

Last updated 2 years agofrom:23d61d855b. Checks:2 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 09 2025
R-4.5-linuxOKFeb 09 2025

Exports:bugs_to_dfdiagnosticfilter_seriesfit_trendformat_datalist_seriesplot_seriesplot_trendread_bugsread_seriesseries_to_dfw_to_rmax

Dependencies:abindaskpassbootclicliprcodacrayoncredentialscurldescfsgertghgitcredsgluehttr2inijsonlitelatticelifecyclemagrittropensslpurrrR2jagsR2WinBUGSR6rappdirsrjagsrlangrprojrootrstudioapistringistringrsysusethisvctrswhiskerwithryamlzip

Get species information

Rendered fromgenerate_data.Rmdusingknitr::rmarkdownon Feb 09 2025.

Last update: 2021-11-05
Started: 2021-11-05

Get started

Rendered frompopbayes.rmdusingknitr::rmarkdownon Feb 09 2025.

Last update: 2023-06-15
Started: 2022-03-04

Citation

To cite popbayes in publications use:

Casajus Nicolas, Pradel Roger (2023). popbayes: Bayesian model to estimate population trends from counts series. R package version 1.2.0, https://frbcesab.github.io/popbayes/.

Corresponding BibTeX entry: 

  @Manual{,
    title = {popbayes: Bayesian model to estimate population trends
      from counts series},
    author = {{Casajus Nicolas} and {Pradel Roger}},
    year = {2023},
    note = {R package version 1.2.0},
    url = {https://frbcesab.github.io/popbayes/},
  }