Package: pmxcode 0.1.3

Sebastien Bihorel

pmxcode: Create Pharmacometric Models

Provides a user interface to create or modify pharmacometric models for various modeling and simulation software platforms.

Authors:Sebastien Bihorel [cre, aut]

pmxcode_0.1.3.tar.gz
pmxcode_0.1.3.tar.gz(r-4.5-noble)pmxcode_0.1.3.tar.gz(r-4.4-noble)
pmxcode_0.1.3.tgz(r-4.4-emscripten)pmxcode_0.1.3.tgz(r-4.3-emscripten)
pmxcode.pdf |pmxcode.html✨
pmxcode/json (API)
NEWS

# Install 'pmxcode' in R:

install.packages('pmxcode', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2 exports 1 stars 0.23 score 73 dependencies 278 downloads

Last updated 3 months agofrom:4f1bb34026. Checks:OK: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 16 2024
R-4.5-linux	OK	Sep 16 2024

Exports:%>%run_app

Dependencies:attempt base64enc bit bit64 bsicons bslib cachem cli clipr commonmark config cpp11 crayon digest dplyr evaluate fansi fastmap fontawesome fs generics glue golem here highr hms htmltools htmlwidgets httpuv jquerylib jsonlite knitr later lifecycle magrittr markdown memoise mime pillar pkgconfig prettyunits progress promises purrr R6 rappdirs rclipboard Rcpp readr rhandsontable rlang rmarkdown rprojroot sass shiny shinyAce shinyBS shinyFiles sourcetools stringi stringr tibble tidyr tidyselect tinytex tzdb utf8 vctrs vroom withr xfun xtable yaml

Introduction to pmxcode

Sebastien Bihorel

Rendered fromintro.Rmdusingknitr::rmarkdownon Sep 16 2024.

Last update: 2023-04-13
Started: 2023-04-13

Citation

Readme and manuals

Help Manual

Help page	Topics
Auto indent mrgsolve code	align_annotations
Auto indent NONMEM code tags	align_tags
Multi-argument version of isTruthy	areTruthy
Check covariate definition table	check_covariate_table
Check if covariate definition table contains rows with incomplete data	check_incomplete_covariate_table
Convert reference code for univariate model creation	convert_reference_code
Generate univariate model code	create_univariate_models
Determines if a file path exists	file_exists
Creation of model code	get_code
Convert of covariance matrix into a 0/1 correlation map table	get_correlation_table
Get lines of code for derived parameters	get_derived_parms_code
Get line of code for individual parameter value	get_individual_parm_code
Get compartment intialization block	get_init_code
Get line of code for individual parameter value	get_mrg_individual_parm_code
Get mrgsolve model parameter code lines as list	get_mrg_parms_code
Creation of mrgsolve code	get_mrgsolve_code
Get the number of PK and PD compartments	get_ncmts
Get NONMEM code blocks	get_nonmem_blocks
Creation of NONMEM code	get_nonmem_code
Get NONMEM model parameter code lines as list	get_parms_code
Get lines of preamble code for transit compartment absorption model and delayed dosing records	get_preamble_code
Get code lines for scaling and bioavailability	get_scaling_code
Get number of THETA parameters	get_theta_number
Convert covariate handsontable data to R data.frame without factor	hot_to_r_raw
Determine if a square matrix is of type block, band or error	is_EDB
New model module	new_model_server
Opposite of areTruthy	notTruthy
Replacement of @ABBREVIATED tag	replace_abbreviated
Replacement of @DATA tag	replace_data
Replace @DES tag	replace_des
Replace @ERROR tag	replace_error
Replacement of @INPUT tag	replace_input
Replace @MODEL tag	replace_model
Replacement of @CAPTURE tag	replace_mrg_capture
Replacement of @CMT tag	replace_mrg_cmt
Replacement of @GLOBAL tag	replace_mrg_global
Replace @MAIN or @PRED tags	replace_mrg_main_pred
Replacement of @ODE tag	replace_mrg_ode
Replacement of @OMEGA tag	replace_mrg_omega
Replacement of @PARAM tag	replace_mrg_param
Replacement of @PLUGIN tag	replace_mrg_plugin
Replacement of @SIGMA tag	replace_mrg_sigma
Replacement of @TABLE tag	replace_mrg_table
Replacement of @NMEXT tag	replace_nmext
Replacement of @OMEGA tag	replace_omega
Replacement of @PATH tag	replace_path
Replace @PK and @PRED tags	replace_pk_pred
Replacement of @PRIOR tag	replace_prior
Replacement of @PROB1 and @PROB2 tags	replace_problem
Replacement of @PURPOSE tag	replace_purpose
Replacement of @SIGMA tag	replace_sigma
Replacement of @SUBROUTINE tag	replace_subroutine
Replace @TABLE tag	replace_table
Replace $TAGs tag	replace_tags
Replace @TASK tag	replace_task
Replacement of @THETA tag	replace_theta
Load resource files	resources
Run the Shiny Application	run_app
Format variables by lines of 10.	tenvars