Package: pliman 2.1.0
pliman: Tools for Plant Image Analysis
Tools for single or batch image manipulation and analysis as described by Olivoto (2022) <doi:10.1111/2041-210X.13803> that can be used to quantify plant leaf area, assess disease severity, count objects, obtain shape measures, object landmarks, and compute Elliptical Fourier Analysis of the object outline, as described by Claude (2008) <doi:10.1007/978-0-387-77789-4>. Additionally, the package includes tools for analyzing grids, which enables high throughput field phenotyping using RGB imagery captured by unmanned aerial vehicles.
Authors:
pliman_2.1.0.tar.gz
pliman_2.1.0.tar.gz(r-4.5-noble)pliman_2.1.0.tar.gz(r-4.4-noble)
pliman_2.1.0.tgz(r-4.4-emscripten)pliman_2.1.0.tgz(r-4.3-emscripten)
pliman.pdf |pliman.html✨
pliman/json (API)
NEWS
# Install 'pliman' in R: |
install.packages('pliman', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tiagoolivoto/pliman/issues
- contours - Contour outlines from five leaves
Last updated 1 years agofrom:737cb28473. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 08 2024 |
R-4.5-linux-x86_64 | OK | Oct 08 2024 |
Exports:%>%analyze_objectsanalyze_objects_iteranalyze_objects_shpapply_fun_to_imgsas_imagecalibratecm_to_dpicm_to_pixelscolumn_to_rownamesconv_hullconv_hull_unifiedcustom_palettedist_transformdistancedpidpi_to_cmdraw_circledraw_n_tagondraw_rectangledraw_squaredraw_trian_equidraw_trian_rectefourierefourier_coefsefourier_errorefourier_invefourier_normefourier_powerefourier_shapeellipsefile_dirfile_extensionfile_nameget_biplotget_measuresget_pliman_viewerget_wd_hereggplot_colorimage_alignimage_augmentimage_autocropimage_binaryimage_blurimage_closingimage_combineimage_contrastimage_createimage_cropimage_dilateimage_dimensionimage_erodeimage_expandimage_exportimage_filterimage_horizontalimage_hreflectimage_importimage_indeximage_openingimage_paletteimage_plimanimage_prepareimage_resizeimage_rotateimage_segmentimage_segment_iterimage_segment_kmeansimage_segment_manualimage_segment_maskimage_shpimage_skeletonimage_squareimage_thinningimage_thinning_guo_hallimage_to_matimage_trimimage_verticalimage_viewimage_vreflectlandmarkslandmarks_addlandmarks_anglelandmarks_distlandmarks_regradileading_zerosmake_brushmake_maskmanipulate_filesmax_listmean_listmeasure_diseasemeasure_disease_bylmeasure_disease_itermeasure_disease_shpmin_listmosaic_cropmosaic_exportmosaic_indexmosaic_inputmosaic_to_plimanmosaic_to_rgbmosaic_viewnpixelsobject_contourobject_coordobject_edgeobject_exportobject_export_shpobject_idobject_isolateobject_labelobject_mapobject_markobject_rgbobject_splitobject_split_shpobject_to_coloropen_wdopen_wd_hereotsupcapick_coordspick_countpick_palettepick_rgbpixel_indexpixels_to_cmpliman_indexespliman_indexes_eqplot_contourplot_ellipseplot_indexplot_index_shpplot_lwplot_massplot_measuresplot_polygonpoly_alignpoly_anglespoly_apex_base_anglepoly_areapoly_caliperpoly_centdistpoly_centerpoly_checkpoly_circularitypoly_circularity_haralickpoly_circularity_normpoly_closepoly_convexitypoly_distptspoly_eccentricitypoly_elongationpoly_flip_xpoly_flip_ypoly_is_closedpoly_jitterpoly_limitspoly_lwpoly_masspoly_measurespoly_pcvpoly_perimeterpoly_rotatepoly_samplepoly_sample_proppoly_slidepoly_smoothpoly_soliditypoly_splinepoly_unclosepoly_width_atprepare_to_shprandom_colorremove_rownamesrgb_to_hsbrgb_to_labrgb_to_srgbround_colsrownames_to_columnsadsd_listseparate_colset_pliman_viewerset_wd_heresummary_indexwatershed2
Dependencies:abindclassclassIntcodetoolsDBIdoParallele1071foreachiteratorsKernSmoothmagrittrMASSproxyRcppRcppArmadillorlangs2sfstarsterraunitswk