Package: pliman 3.0.0
pliman: Tools for Plant Image Analysis
Tools for both single and batch image manipulation and analysis (Olivoto, 2022 <doi:10.1111/2041-210X.13803>) and phytopathometry (Olivoto et al., 2022 <doi:10.1007/S40858-021-00487-5>). The tools can be used for the quantification of leaf area, object counting, extraction of image indexes, shape measurement, object landmark identification, and Elliptical Fourier Analysis of object outlines (Claude (2008) <doi:10.1007/978-0-387-77789-4>). The package also provides a comprehensive pipeline for generating shapefiles with complex layouts and supports high-throughput phenotyping of RGB, multispectral, and hyperspectral orthomosaics. This functionality facilitates field phenotyping using UAV- or satellite-based imagery.
Authors:
pliman_3.0.0.tar.gz
pliman_3.0.0.tar.gz(r-4.5-noble)pliman_3.0.0.tar.gz(r-4.4-noble)
pliman_3.0.0.tgz(r-4.4-emscripten)pliman_3.0.0.tgz(r-4.3-emscripten)
pliman.pdf |pliman.html✨
pliman/json (API)
NEWS
# Install 'pliman' in R: |
install.packages('pliman', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nepem-ufsc/pliman/issues
Pkgdown:https://nepem-ufsc.github.io
- contours - Contour outlines from five leaves
Last updated 29 days agofrom:ffab10ab3b. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 07 2024 |
R-4.5-linux-x86_64 | OK | Nov 07 2024 |
Exports:%>%analyze_objectsanalyze_objects_iteranalyze_objects_minimalanalyze_objects_shpapply_fun_to_imgsas_imagecalibratecm_to_dpicm_to_pixelscolumn_to_rownamesconv_hullconv_hull_unifiedcustom_palettedist_transformdistancedpidpi_to_cmdraw_circledraw_n_tagondraw_rectangledraw_squaredraw_trian_equidraw_trian_rectefourierefourier_coefsefourier_errorefourier_invefourier_normefourier_powerefourier_shapeellipsefile_dirfile_extensionfile_nameget_biplotget_measuresget_pliman_viewerget_wd_hereggplot_colorimage_alignimage_alphaimage_augmentimage_autocropimage_binaryimage_blurimage_closingimage_combineimage_contrastimage_createimage_cropimage_dilateimage_dimensionimage_erodeimage_expandimage_exportimage_filterimage_horizontalimage_hreflectimage_importimage_indeximage_inputimage_openingimage_paletteimage_plimanimage_prepareimage_resizeimage_rotateimage_segmentimage_segment_iterimage_segment_kmeansimage_segment_manualimage_segment_maskimage_shpimage_skeletonimage_squareimage_thinningimage_thinning_guo_hallimage_to_matimage_trimimage_verticalimage_viewimage_vreflectlandmarkslandmarks_addlandmarks_anglelandmarks_distlandmarks_regradileading_zerosmake_brushmake_maskmanipulate_filesmax_listmean_listmeasure_diseasemeasure_disease_bylmeasure_disease_itermeasure_disease_shpmeasure_injurymin_listmosaic_aggregatemosaic_analyzemosaic_analyze_itermosaic_chmmosaic_chm_extractmosaic_chm_maskmosaic_cropmosaic_drawmosaic_epsgmosaic_exportmosaic_extractmosaic_histmosaic_indexmosaic_index2mosaic_inputmosaic_interpolatemosaic_lonlat2epsgmosaic_plotmosaic_plot_rgbmosaic_preparemosaic_projectmosaic_resamplemosaic_segmentmosaic_segment_pickmosaic_to_plimanmosaic_to_rgbmosaic_vectorizemosaic_viewnpixelsobject_contourobject_coordobject_edgeobject_exportobject_export_shpobject_idobject_isolateobject_labelobject_mapobject_markobject_rgbobject_splitobject_split_shpobject_to_coloropen_wdopen_wd_hereotsupcapick_coordspick_countpick_palettepick_rgbpixel_indexpixels_to_cmpliman_indexespliman_indexes_eqpliman_indexes_ican_computepliman_indexes_mepliman_indexes_rgbplot_contourplot_ellipseplot_idplot_indexplot_index_shpplot_lwplot_massplot_measuresplot_polygonpoly_alignpoly_anglespoly_apex_base_anglepoly_areapoly_caliperpoly_centdistpoly_centdist_masspoly_centerpoly_checkpoly_circularitypoly_circularity_haralickpoly_circularity_normpoly_closepoly_convexitypoly_distptspoly_eccentricitypoly_elongationpoly_flip_xpoly_flip_ypoly_is_closedpoly_jitterpoly_limitspoly_lwpoly_masspoly_measurespoly_pcvpoly_perimeterpoly_rotatepoly_samplepoly_sample_proppoly_slidepoly_smoothpoly_soliditypoly_splinepoly_unclosepoly_width_atprepare_to_shprandom_colorremove_rownamesrgb_to_hsbrgb_to_labrgb_to_srgbround_colsrownames_to_columnsadsd_listsentinel_to_tifseparate_colset_pliman_viewerset_wd_hereshapefile_buildshapefile_editshapefile_exportshapefile_inputshapefile_interpolateshapefile_measuresshapefile_plotshapefile_surfaceshapefile_viewsummary_indexwatershed2
Dependencies:classclassIntclicodetoolsDBIdigestdoFuturedplyre1071exactextractrfansiforeachfuturefuture.applygenericsglobalsglueiteratorsKernSmoothlatticelifecyclelistenvmagrittrMASSparallellypillarpkgconfigproxypurrrR6rasterRcppRcppArmadillorlangs2sfspterratibbletidyselectunitsutf8vctrswithrwk