Package: phyreg 1.0.2
Alan Grafen
phyreg: The Phylogenetic Regression of Grafen (1989)
Provides general linear model facilities (single y-variable, multiple x-variables with arbitrary mixture of continuous and categorical and arbitrary interactions) for cross-species data. The method is, however, based on the nowadays rather uncommon situation in which uncertainty about a phylogeny is well represented by adopting a single polytomous tree. The theory is in A. Grafen (1989, Proc. R. Soc. B 326, 119-157) and aims to cope with both recognised phylogeny (closely related species tend to be similar) and unrecognised phylogeny (a polytomy usually indicates ignorance about the true sequence of binary splits).
Authors:
phyreg_1.0.2.tar.gz
phyreg_1.0.2.tar.gz(r-4.5-noble)phyreg_1.0.2.tar.gz(r-4.4-noble)
phyreg_1.0.2.tgz(r-4.4-emscripten)phyreg_1.0.2.tgz(r-4.3-emscripten)
phyreg.pdf |phyreg.html✨
phyreg/json (API)
| # Install 'phyreg' in R: |
| install.packages('phyreg', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:60f7c78ec4. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 18 2024 |
| R-4.5-linux | OK | Dec 18 2024 |
Exports:factory_defaultinfnew_defaultphyfromnewickphyfromphylophyreg
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The Phylogenetic Regression of Grafen (1989) | phyreg-package |
| Example data | extax myd0 myd1 myd2 myd3 newickstr |
| Default settings for "minor" parameters | factory_default new_default |
| Provides information about the stored output of a call to phyreg() | inf |
| Performs a phylogenetic regression | phyreg |
| Using phylogenies formatted in standard but "other" ways | phyfromnewick phyfromphylo |