Package: phylospatial 1.0.0

Matthew Kling

phylospatial: Spatial Phylogenetic Analysis

Conduct various analyses on spatial phylogenetics. Use your data on an evolutionary tree and geographic distributions of the terminal taxa to compute diversity and endemism metrics, test significance with null model randomization, analyze community turnover and biotic regionalization, and perform spatial conservation prioritizations. All functions support quantitative community data in addition to binary data.

Authors:Matthew Kling [aut, cre, cph]

phylospatial_1.0.0.tar.gz
phylospatial_1.0.0.tar.gz(r-4.5-noble)phylospatial_1.0.0.tar.gz(r-4.4-noble)
phylospatial_1.0.0.tgz(r-4.4-emscripten)phylospatial_1.0.0.tgz(r-4.3-emscripten)
phylospatial.pdf |phylospatial.html✨
phylospatial/json (API)

# Install 'phylospatial' in R:
install.packages('phylospatial', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/matthewkling/phylospatial/issues

Pkgdown site:https://matthewkling.github.io

3.30 score 19 exports 23 dependencies

Last updated 28 days agofrom:9d56495344. Checks:2 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 24 2025
R-4.5-linuxOKJan 24 2025

Exports:benefitmossphylospatialplot_lambdaps_add_dissimps_canapeps_canaperps_dissimps_diversityps_get_commps_ordinateps_prioritizeps_randps_regionsps_regions_evalps_rgbps_simulatequantizeto_spatial

Dependencies:apeclassclassIntclusterDBIdigeste1071KernSmoothlatticemagrittrMASSMatrixmgcvnlmepermuteproxyRcpps2sfterraunitsveganwk

Alpha phylogenetic diversity

Rendered fromalpha-diversity.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2025-01-24
Started: 2025-01-24

Phylogenetic beta diversity

Rendered frombeta-diversity.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2025-01-24
Started: 2025-01-24

Spatial phylogentic data

Rendered fromphylospatial-data.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2025-01-24
Started: 2025-01-24

Conservation prioritization

Rendered fromprioritization.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2025-01-24
Started: 2025-01-24