Package: phenModel 1.0

Rafael de Andrade Moral

phenModel: Insect Phenology Model Evaluation Based on Daily Temperatures

Generates predicted stage change days for an insect, based on daily temperatures and development rate parameters, as developed by Pollard (2014) <http://mural.maynoothuniversity.ie/view/ethesisauthor/Pollard=3ACiaran_P=2E=3A=3A.html>. A few example datasets are included and implemented for P. vulgatissima, the blue willow beetle, but the approach can be readily applied to other species that display similar behaviour.

Authors:Rafael de Andrade Moral [aut, cre], Rowan Fealy [aut]

phenModel_1.0.tar.gz
phenModel_1.0.tar.gz(r-4.5-noble)phenModel_1.0.tar.gz(r-4.4-noble)
phenModel_1.0.tgz(r-4.4-emscripten)phenModel_1.0.tgz(r-4.3-emscripten)
phenModel.pdf |phenModel.html✨
phenModel/json (API)

# Install 'phenModel' in R:
install.packages('phenModel', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 130 downloads 1 mentions 13 exports 34 dependencies

Last updated 5 years agofrom:d1f35d29dd. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 01 2024
R-4.5-linuxOKDec 01 2024

Exports:assign_observed_databoxplot_sensitivitycdl_checkcum_dev_rateget_cycleget_total_infophen_modelphen_model_forecastphen_model_gen2plot_phen_forecastplot_phen_modelsensitivitysummary_sensitivity

Dependencies:clicolorspacedplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshaperlangscalestibbletidyselectutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Insect Phenology Model Evaluation Based on Daily TemperaturesphenModel-package phenModel
Observed Data Preparationassign_observed_data
Internal functions to used to evaluate a phenology model and plot the resultsbp_maxmin budburst_pred exp_dec exp_dec_wrapper get_chill_days get_day_length get_thermal_units get_Tmean lactin lactin_wrapper stage_change_pred stage_change_pred_gen2 weibull3p weibull3p_inverse weibull3p_inverse_wrapper
Casement 1995-1996 Datacasement9596
Plots for Checking Sensitivity to CDLcdl_check
Cumulative Development Ratescum_dev_rate
Obtain Yearly Cyclesget_cycle
Compute Day Length, Mean Temperature, Thermal Units, and Cumulative Chill Daysget_total_info
Phenology Model Evaluationphen_model
Multi-Year Forecast Based on the Phenology Modelphen_model_forecast
Phenology Model Evaluation for Further Generationsphen_model_gen2
Plot Phenology Model Multi-Year Forecastplot_phen_forecast
Plot Phenology Model Evaluationsplot_phen_model
Estimated Parameters for the Exponential Decay Model for Budburstpvulg_budburst_parameters
Estimated Parameters for the Lactin Model for P. Vulgatissimapvulg_lactin_parameters
Estimated Parameters for the Weibull Model for P. Vulgatissimapvulg_weibull_parameters
Sensitivity Analysis for Evaluated Phenology Modelboxplot_sensitivity sensitivity sensitivity_bud_days sensitivity_bud_parms sensitivity_cdl sensitivity_lactin sensitivity_Tbase sensitivity_weibull summary_sensitivity
Valentia Datavalentia