Package: phase1PRMD 1.0.2

Lu Zhang

phase1PRMD: Personalized Repeated Measurement Design for Phase I Clinical Trials

Implements Bayesian phase I repeated measurement design that accounts for multidimensional toxicity endpoints and longitudinal efficacy measure from multiple treatment cycles. The package provides flags to fit a variety of model-based phase I design, including 1 stage models with or without individualized dose modification, 3-stage models with or without individualized dose modification, etc. Functions are provided to recommend dosage selection based on the data collected in the available patient cohorts and to simulate trial characteristics given design parameters. Yin, Jun, et al. (2017) <doi:10.1002/sim.7134>.

Authors:Lu Zhang, Jun Yin

phase1PRMD_1.0.2.tar.gz
phase1PRMD_1.0.2.tar.gz(r-4.5-noble)phase1PRMD_1.0.2.tar.gz(r-4.4-noble)
phase1PRMD_1.0.2.tgz(r-4.4-emscripten)phase1PRMD_1.0.2.tgz(r-4.3-emscripten)
phase1PRMD.pdf |phase1PRMD.html
phase1PRMD/json (API)
NEWS

# Install 'phase1PRMD' in R:
install.packages('phase1PRMD', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • eff - Efficacy response generation parameters
  • patlist_sim - A list of patient information
  • prob - Toxicity probability matrix

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.74 score 11 scripts 195 downloads 7 exports 68 dependencies

Last updated 5 years agofrom:3227d3276f. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 11 2024
R-4.5-linuxOKNov 11 2024

Exports:eff_suggesteff_summarynTTP_summarynTTP.arraypatlist.displayRunPRMDSimPRMD

Dependencies:arrayhelpersbase64encbslibcachemclicodacolorspacecpp11digestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhtmltoolsisobandjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrR6rappdirsRColorBrewerRcppreshape2rjagsrlangrmarkdownrstudioapisassscalesstringistringrsvglitesvUnitsystemfontstibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxml2yaml