Package: perspectev 1.1
Kenneth B. Hoehn
perspectev: Permutation of Species During Turnover Events
Provides a robust framework for analyzing the extent to which differential survival with respect to higher level trait variation is reducible to lower level variation. In addition to its primary test, it also provides functions for simulation-based power analysis, reading in common data set formats, and visualizing results. Temporarily contains an edited version of function hr.mcp() from package 'wild1', written by Glen Sargeant. For tutorial see: http://evolve.zoo.ox.ac.uk/Evolve/Perspectev.html.
Authors:
perspectev_1.1.tar.gz
perspectev_1.1.tar.gz(r-4.5-noble)perspectev_1.1.tar.gz(r-4.4-noble)
perspectev_1.1.tgz(r-4.4-emscripten)perspectev_1.1.tgz(r-4.3-emscripten)
perspectev.pdf |perspectev.html✨
perspectev/json (API)
| # Install 'perspectev' in R: |
| install.packages('perspectev', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- occurrence_data - Supplied data sets
- testData - Supplied data sets
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 years agofrom:ca0f72f10d. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 04 2024 |
| R-4.5-linux | OK | Dec 04 2024 |
Exports:dnaThetahr.mcpmcpRangeperspectev.calcperspectev.permuteperspectev.plotperspectev.readperspectev.simulateperspectev.simulation.permuteperspectev.testt1Ranget1t2Covart1t2Uniquet1Uniquet1Vart2Ranget2Uniquet2Var
Dependencies:apebootclicodetoolscolorspacedigestdoParallelfansifarverforeachggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrmapprojmapsMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalessptibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Permutation of Species During Turnover Events | perspectev-package perspectev |
| Home range estimation | hr.mcp |
| Supplied data sets | occurrence_data testData |
| Calculate upper and lower level trait values and survivorship | perspectev.calc |
| Plotting function for permutation analysis | perspectev.plot |
| Convert occurrence data to perspectev input format | perspectev.read |
| Simulate upper/lower level selection at different intensities and observe resulting p values. | perspectev.simulate |
| Test for irreducibility of relationship between upper level traits and survivorship | perspectev.test |