This package is considered a duplicate. The official version of this package is found at:https://egeulgen.r-universe.dev/pathfindR.data
Package: pathfindR.data 2.2.0
Ege Ulgen
pathfindR.data: Data Package for 'pathfindR'
This is a data-only package, containing data needed to run the CRAN package 'pathfindR', a package for enrichment analysis utilizing active subnetworks. This package contains protein-protein interaction network data, data related to gene sets and example input/output data.
Authors:
pathfindR.data_2.2.0.tar.gz
pathfindR.data_2.2.0.tar.gz(r-4.7-any)pathfindR.data_2.2.0.tar.gz(r-4.6-any)
pathfindR.data_2.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
pathfindR.data/json (API)
| # Install 'pathfindR.data' in R: |
| install.packages('pathfindR.data', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/egeulgen/pathfindr.data/issues
Datasets:
- biocarta_descriptions - BioCarta Pathways - Descriptions
- biocarta_genes - BioCarta Pathways - Gene Sets
- cell_markers_descriptions - Human Cell Markers - Descriptions
- cell_markers_gsets - Human Cell Markers - Gene Sets
- example_active_snws - Example Active Subnetworks
- example_comparison_output - Second Example Output for the pathfindR Enrichment Workflow
- example_custom_genesets_result - Custom Gene Set Enrichment Results
- example_experiment_matrix - Example Experiment Matrix for pathfindR - Enriched Term Scoring
- example_mmu_input - Example Input for Mus musculus - Myeloma Analysis
- example_mmu_output - Example Output for Mus musculus - Myeloma Analysis
- example_pathfindR_input - Example Input for the pathfindR Enrichment Workflow - Rheumatoid Arthritis
- example_pathfindR_output - Example Output for the pathfindR Enrichment Workflow - Rheumatoid Arthritis
- example_pathfindR_output_clustered - Example Output for the pathfindR Clustering Workflow - Rheumatoid Arthritis
- go_all_genes - Gene Ontology - All Gene Ontology Gene Sets
- kegg_descriptions - KEGG Pathways - Descriptions
- kegg_genes - KEGG Pathways - Gene Sets
- mmu_kegg_descriptions - Mus Musculus KEGG Pathways - Descriptions
- mmu_kegg_genes - Mus Musculus KEGG Pathways - Gene Sets
- pathfindR.data_updates - Table of Data for pathfindR
- reactome_descriptions - Reactome Pathways - Descriptions
- reactome_genes - Reactome Pathways - Gene Sets
Last updated from:dd81c4cdf7. Checks:4 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 139 | ||
| source / vignettes | OK | 161 | ||
| linux-release-x86_64 | OK | 122 | ||
| wasm-release | OK | 110 |
Exports:
Dependencies:
