Package: partition 0.2.2
partition: Agglomerative Partitioning Framework for Dimension Reduction
A fast and flexible framework for agglomerative partitioning. 'partition' uses an approach called Direct-Measure-Reduce to create new variables that maintain the user-specified minimum level of information. Each reduced variable is also interpretable: the original variables map to one and only one variable in the reduced data set. 'partition' is flexible, as well: how variables are selected to reduce, how information loss is measured, and the way data is reduced can all be customized. 'partition' is based on the Partition framework discussed in Millstein et al. (2020) <doi:10.1093/bioinformatics/btz661>.
Authors:
partition_0.2.2.tar.gz
partition_0.2.2.tar.gz(r-4.5-noble)partition_0.2.2.tar.gz(r-4.4-noble)
partition_0.2.2.tgz(r-4.4-emscripten)partition_0.2.2.tgz(r-4.3-emscripten)
partition.pdf |partition.html✨
partition/json (API)
NEWS
# Install 'partition' in R: |
install.packages('partition', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uscbiostats/partition/issues
Pkgdown:https://uscbiostats.github.io
- baxter_clinical - Microbiome data
- baxter_data_dictionary - Microbiome data
- baxter_family - Microbiome data
- baxter_genus - Microbiome data
- baxter_otu - Microbiome data
Last updated 2 months agofrom:12c9447aa6. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 09 2024 |
R-4.5-linux-x86_64 | OK | Nov 09 2024 |
Exports:%>%as_directoras_measureas_partition_stepas_partitioneras_reducercorrdirect_distancedirect_distance_pearsondirect_distance_spearmandirect_k_clusterfilter_reducediccis_partitionis_partition_stepis_partitionermap_clustermap_partitionmapping_groupsmapping_keymeasure_iccmeasure_min_iccmeasure_min_r2measure_std_mutualinfomeasure_variance_explainedmutual_informationpart_iccpart_kmeanspart_minr2part_pc1part_stdmipartitionpartition_scorespermute_dfplot_area_clustersplot_informationplot_nclusterplot_permutationplot_stacked_area_clustersreduce_clusterreduce_first_componentreduce_kmeansreduce_scaled_meanreplace_partitionerscaled_meansimulate_block_datasuper_partitiontest_permutationunnest_mappingsunnest_reduced
Dependencies:clicolorspacecpp11crayondplyrfansifarverforcatsgenericsggplot2gluegtablehmsinfotheoisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerRcppRcppArmadillorlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr