Package: parmigene 1.1.1

Gabriele Sales

parmigene: Parallel Mutual Information Estimation for Gene Network Reconstruction

Parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks (Sales et al, 2011 <doi:10.1093/bioinformatics/btr274>).

Authors:Gabriele Sales [aut, cre], Chiara Romualdi [aut]

parmigene_1.1.1.tar.gz
parmigene_1.1.1.tar.gz(r-4.7-arm64)parmigene_1.1.1.tar.gz(r-4.7-x86_64)parmigene_1.1.1.tar.gz(r-4.6-arm64)parmigene_1.1.1.tar.gz(r-4.6-x86_64)
parmigene_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
parmigene/json (API)

# Install 'parmigene' in R:
install.packages('parmigene', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sales-lab/parmigene/issues

Uses libs:
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

openmp

4.38 score 4 packages 40 scripts 460 downloads 16 mentions 7 exports 0 dependencies

Last updated from:d988e7a874. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK109
linux-devel-x86_64OK98
source / vignettesOK122
linux-release-arm64OK149
linux-release-x86_64OK95
wasm-releaseOK99

Exports:aracne.aaracne.mclrknnmiknnmi.allknnmi.crossmrnet

Dependencies: