Package: optrcdmaeAT 1.0.1
Dibaba Bayisa Gemechu
optrcdmaeAT: Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments
Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2018) <doi:10.1080/03610918.2018.1429617> algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
Authors:
optrcdmaeAT_1.0.1.tar.gz
optrcdmaeAT_1.0.1.tar.gz(r-4.7-any)optrcdmaeAT_1.0.1.tar.gz(r-4.6-any)
optrcdmaeAT_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
optrcdmaeAT/json (API)
| # Install 'optrcdmaeAT' in R: |
| install.packages('optrcdmaeAT', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:e599799a7d. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 130 | ||
| source / vignettes | OK | 189 | ||
| linux-release-x86_64 | OK | 136 | ||
| wasm-release | OK | 96 |
Exports:Aoptrcd.maeAAoptrcd.maeTcmatrcd.maeDoptrcd.maeADoptrcd.maeTEoptrcd.maeAEoptrcd.maeTfixparrcd.maegraphoptrcd.maeintcrcd.maemmenurcd.maeMVoptrcd.maeAMVoptrcd.maeToptrcdmaeAToptrcdmaeAT.defaultprint.optrcdmaeATprint.summary.optrcdmaeATsummary.optrcdmaeAT
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Computes the treatment information matrix | cmatrcd.mae |
| Sets parametric values | fixparrcd.mae |
| Creates the graphical layout of resultant optimal row-column design | graphoptrcd.mae |
| Generates initial connected row-column design | intcrcd.mae |
| Creates the main menu tcltk window | mmenurcd.mae |
| Optimal row-column designs for two-colour cDNA microarray experiments | optrcdmaeAT optrcdmaeAT.default print.optrcdmaeAT print.summary.optrcdmaeAT summary.optrcdmaeAT |
| Internal functions | Aoptrcd.maeA Aoptrcd.maeT Doptrcd.maeA Doptrcd.maeT Eoptrcd.maeA Eoptrcd.maeT MVoptrcd.maeA MVoptrcd.maeT optrcdmaeAT-internal |