Package: optrcdmaeAT 1.0.0
Dibaba Bayisa Gemechu
optrcdmaeAT: Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments
Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2016, unpublished) algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
Authors:
optrcdmaeAT_1.0.0.tar.gz
optrcdmaeAT_1.0.0.tar.gz(r-4.5-noble)optrcdmaeAT_1.0.0.tar.gz(r-4.4-noble)
optrcdmaeAT_1.0.0.tgz(r-4.4-emscripten)optrcdmaeAT_1.0.0.tgz(r-4.3-emscripten)
optrcdmaeAT.pdf |optrcdmaeAT.html✨
optrcdmaeAT/json (API)
| # Install 'optrcdmaeAT' in R: |
| install.packages('optrcdmaeAT', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:20d1a5e82d. Checks:OK: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
Exports:Aoptrcd.maeAAoptrcd.maeTcmatrcd.maeDoptrcd.maeADoptrcd.maeTEoptrcd.maeAEoptrcd.maeTfixparrcd.maegraphoptrcd.maeintcrcd.maemmenurcd.maeMVoptrcd.maeAMVoptrcd.maeToptrcdmaeAToptrcdmaeAT.defaultprint.optrcdmaeATprint.summary.optrcdmaeATsummary.optrcdmaeAT
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Computes the treatment information matrix | cmatrcd.mae |
| Sets parametric values | fixparrcd.mae |
| Creates the graphical layout of resultant optimal row-column design | graphoptrcd.mae |
| Generates initial connected row-column design | intcrcd.mae |
| Creates the main menu tcltk window | mmenurcd.mae |
| Optimal row-column designs for two-colour cDNA microarray experiments | optrcdmaeAT optrcdmaeAT.default print.optrcdmaeAT print.summary.optrcdmaeAT summary.optrcdmaeAT |
| Internal functions | Aoptrcd.maeA Aoptrcd.maeT Doptrcd.maeA Doptrcd.maeT Eoptrcd.maeA Eoptrcd.maeT MVoptrcd.maeA MVoptrcd.maeT optrcdmaeAT-internal |