Package: optrcdmaeAT 1.0.0

Dibaba Bayisa Gemechu

optrcdmaeAT: Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments

Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2016, unpublished) algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.

Authors:Legesse Kassa Debusho, Dibaba Bayisa Gemechu, and Linda Haines

optrcdmaeAT_1.0.0.tar.gz
optrcdmaeAT_1.0.0.tar.gz(r-4.5-noble)optrcdmaeAT_1.0.0.tar.gz(r-4.4-noble)
optrcdmaeAT_1.0.0.tgz(r-4.4-emscripten)optrcdmaeAT_1.0.0.tgz(r-4.3-emscripten)
optrcdmaeAT.pdf |optrcdmaeAT.html✨
optrcdmaeAT/json (API)

# Install 'optrcdmaeAT' in R:
install.packages('optrcdmaeAT', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 149 downloads 18 exports 12 dependencies

Last updated 8 years agofrom:20d1a5e82d. Checks:2 OK, 1 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 30 2025
R-4.5-linuxNOTEMar 30 2025
R-4.4-linuxOKMar 30 2025

Exports:Aoptrcd.maeAAoptrcd.maeTcmatrcd.maeDoptrcd.maeADoptrcd.maeTEoptrcd.maeAEoptrcd.maeTfixparrcd.maegraphoptrcd.maeintcrcd.maemmenurcd.maeMVoptrcd.maeAMVoptrcd.maeToptrcdmaeAToptrcdmaeAT.defaultprint.optrcdmaeATprint.summary.optrcdmaeATsummary.optrcdmaeAT

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs

Citation

To cite package ‘optrcdmaeAT’ in publications use:

Debusho LK, Gemechu DB, Haines L (2017). optrcdmaeAT: Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments. R package version 1.0.0, https://CRAN.R-project.org/package=optrcdmaeAT.

ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see ‘help("citation")’.

Corresponding BibTeX entry: 

  @Manual{,
    title = {optrcdmaeAT: Optimal Row-Column Designs for Two-Colour
      cDNA Microarray Experiments},
    author = {Legesse Kassa Debusho and Dibaba Bayisa Gemechu and Linda
      Haines},
    year = {2017},
    note = {R package version 1.0.0},
    url = {https://CRAN.R-project.org/package=optrcdmaeAT},
  }

Readme and manuals

Help Manual

Help pageTopics
Computes the treatment information matrixcmatrcd.mae
Sets parametric valuesfixparrcd.mae
Creates the graphical layout of resultant optimal row-column designgraphoptrcd.mae
Generates initial connected row-column designintcrcd.mae
Creates the main menu tcltk windowmmenurcd.mae
Optimal row-column designs for two-colour cDNA microarray experimentsoptrcdmaeAT optrcdmaeAT.default print.optrcdmaeAT print.summary.optrcdmaeAT summary.optrcdmaeAT
Internal functionsAoptrcd.maeA Aoptrcd.maeT Doptrcd.maeA Doptrcd.maeT Eoptrcd.maeA Eoptrcd.maeT MVoptrcd.maeA MVoptrcd.maeT optrcdmaeAT-internal