Package: optbdmaeAT 1.0.1

Dibaba Bayisa Gemechu

optbdmaeAT: Optimal Block Designs for Two-Colour cDNA Microarray Experiments

Computes A-, MV-, D- and E-optimal or near-optimal block designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all possible elementary treatment contrasts. The algorithms used in this package are based on the treatment exchange and array exchange algorithms of Debusho, Gemechu and Haines (2016, unpublished). The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.

Authors:Dibaba Bayisa Gemechu, Legesse Kassa Debusho, and Linda Haines

optbdmaeAT_1.0.1.tar.gz
optbdmaeAT_1.0.1.tar.gz(r-4.5-noble)optbdmaeAT_1.0.1.tar.gz(r-4.4-noble)
optbdmaeAT_1.0.1.tgz(r-4.4-emscripten)optbdmaeAT_1.0.1.tgz(r-4.3-emscripten)
optbdmaeAT.pdf |optbdmaeAT.html
optbdmaeAT/json (API)

# Install 'optbdmaeAT' in R:
install.packages('optbdmaeAT', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

18 exports 0.00 score 12 dependencies 151 downloads

Last updated 8 years agofrom:95e7d0a608. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 20 2024
R-4.5-linuxOKAug 20 2024

Exports:Aoptbd.maeAAoptbd.maeTcmatbd.maeDoptbd.maeADoptbd.maeTEoptbd.maeAEoptbd.maeTfixparbd.maegraphoptbd.maeintcbd.maemmenubd.maeMVoptbd.maeAMVoptbd.maeToptbdmaeAToptbdmaeAT.defaultprint.optbdmaeATprint.summary.optbdmaeATsummary.optbdmaeAT

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs

Readme and manuals

Help Manual

Help pageTopics
Computes the treatment information matrixcmatbd.mae
Sets parametric valuesfixparbd.mae
Creates the graphical layout of resultant optimal designgraphoptbd.mae
Generates initial connected block designintcbd.mae
Creates the main menu tcltk windowmmenubd.mae
Optimal block designs for two-colour cDNA microarray experimentsoptbdmaeAT optbdmaeAT.default print.optbdmaeAT print.summary.optbdmaeAT summary.optbdmaeAT
Internal functionsAoptbd.maeA Aoptbd.maeT Doptbd.maeA Doptbd.maeT Eoptbd.maeA Eoptbd.maeT MVoptbd.maeA MVoptbd.maeT optbdmaeAT-internal