Package: optbdmaeAT 1.0.1
Dibaba Bayisa Gemechu
optbdmaeAT: Optimal Block Designs for Two-Colour cDNA Microarray Experiments
Computes A-, MV-, D- and E-optimal or near-optimal block designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all possible elementary treatment contrasts. The algorithms used in this package are based on the treatment exchange and array exchange algorithms of Debusho, Gemechu and Haines (2016, unpublished). The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
Authors:
optbdmaeAT_1.0.1.tar.gz
optbdmaeAT_1.0.1.tar.gz(r-4.5-noble)optbdmaeAT_1.0.1.tar.gz(r-4.4-noble)
optbdmaeAT_1.0.1.tgz(r-4.4-emscripten)optbdmaeAT_1.0.1.tgz(r-4.3-emscripten)
optbdmaeAT.pdf |optbdmaeAT.html✨
optbdmaeAT/json (API)
| # Install 'optbdmaeAT' in R: |
| install.packages('optbdmaeAT', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:95e7d0a608. Checks:OK: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
Exports:Aoptbd.maeAAoptbd.maeTcmatbd.maeDoptbd.maeADoptbd.maeTEoptbd.maeAEoptbd.maeTfixparbd.maegraphoptbd.maeintcbd.maemmenubd.maeMVoptbd.maeAMVoptbd.maeToptbdmaeAToptbdmaeAT.defaultprint.optbdmaeATprint.summary.optbdmaeATsummary.optbdmaeAT
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Computes the treatment information matrix | cmatbd.mae |
| Sets parametric values | fixparbd.mae |
| Creates the graphical layout of resultant optimal design | graphoptbd.mae |
| Generates initial connected block design | intcbd.mae |
| Creates the main menu tcltk window | mmenubd.mae |
| Optimal block designs for two-colour cDNA microarray experiments | optbdmaeAT optbdmaeAT.default print.optbdmaeAT print.summary.optbdmaeAT summary.optbdmaeAT |
| Internal functions | Aoptbd.maeA Aoptbd.maeT Doptbd.maeA Doptbd.maeT Eoptbd.maeA Eoptbd.maeT MVoptbd.maeA MVoptbd.maeT optbdmaeAT-internal |