Package: optbdmaeAT 1.0.2
Dibaba Bayisa Gemechu
optbdmaeAT: Optimal Block Designs for Two-Colour cDNA Microarray Experiments
Computes A-, MV-, D- and E-optimal or near-optimal block designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all possible elementary treatment contrasts. The algorithms used in this package are based on the treatment exchange and array exchange algorithms of Debusho, Gemechu and Haines (2018) <doi:10.1080/03610918.2018.1429617>. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
Authors:
optbdmaeAT_1.0.2.tar.gz
optbdmaeAT_1.0.2.tar.gz(r-4.7-any)optbdmaeAT_1.0.2.tar.gz(r-4.6-any)
optbdmaeAT_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
optbdmaeAT/json (API)
| # Install 'optbdmaeAT' in R: |
| install.packages('optbdmaeAT', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:6743651061. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 126 | ||
| source / vignettes | OK | 204 | ||
| linux-release-x86_64 | OK | 116 | ||
| wasm-release | OK | 98 |
Exports:Aoptbd.maeAAoptbd.maeTcmatbd.maeDoptbd.maeADoptbd.maeTEoptbd.maeAEoptbd.maeTfixparbd.maegraphoptbd.maeintcbd.maemmenubd.maeMVoptbd.maeAMVoptbd.maeToptbdmaeAToptbdmaeAT.defaultprint.optbdmaeATprint.summary.optbdmaeATsummary.optbdmaeAT
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Computes the treatment information matrix | cmatbd.mae |
| Sets parametric values | fixparbd.mae |
| Creates the graphical layout of resultant optimal design | graphoptbd.mae |
| Generates initial connected block design | intcbd.mae |
| Creates the main menu tcltk window | mmenubd.mae |
| Optimal block designs for two-colour cDNA microarray experiments | optbdmaeAT optbdmaeAT.default print.optbdmaeAT print.summary.optbdmaeAT summary.optbdmaeAT |
| Internal functions | Aoptbd.maeA Aoptbd.maeT Doptbd.maeA Doptbd.maeT Eoptbd.maeA Eoptbd.maeT MVoptbd.maeA MVoptbd.maeT optbdmaeAT-internal |