| Subset a cdm reference object. | [[.cdm_reference |
| Assign a table to a cdm reference. | [[<-.cdm_reference |
| Subset a cdm reference object. | $.cdm_reference |
| Assign an table to a cdm reference. | $<-.cdm_reference |
| Required columns for each of the achilles result tables | achillesColumns |
| Names of the tables that contain the results of achilles analyses | achillesTables |
| Assert that an object is a character and fulfill certain conditions. | assertCharacter |
| Assert that an object is within a certain oprtions. | assertChoice |
| Assert that an object has a certain class. | assertClass |
| Assert Date | assertDate |
| Assert that an object is a list. | assertList |
| Assert that an object is a logical. | assertLogical |
| Assert that an object is a numeric. | assertNumeric |
| Assert that an object is a table. | assertTable |
| Assert that an expression is TRUE. | assertTrue |
| Get attrition from an object. | attrition |
| Get cohort attrition from a cohort_table object. | attrition.cohort_table |
| Bind two or more objects of the same class. | bind |
| Bind two or more cohort tables | bind.cohort_table |
| Bind two or summarised_result objects | bind.summarised_result |
| Create a cdm object from local tables | cdmFromTables |
| Get the name of a cdm_reference associated object | cdmName |
| Get the 'cdm_reference' of a 'cdm_table'. | cdmReference |
| Restrict the cdm object to a subset of tables. | cdmSelect |
| Get the cdmSource of an object. | cdmSource |
| Get the source type of a cdm_reference object. | cdmSourceType |
| This is an internal developer focused function that creates a cdm_table from a table that shares the source but it is not a cdm_table. Please use insertTable if you want to insert a table to a cdm_reference object. | cdmTableFromSource |
| Get the version of an object. | cdmVersion |
| Check whether a cohort table satisfies requirements | checkCohortRequirements |
| Get codelist from a cohort_table object. | cohortCodelist |
| Required columns for a generated cohort set. | cohortColumns |
| Get cohort counts from a cohort_table object. | cohortCount |
| Cohort tables that a cdm reference can contain in the OMOP Common Data Model. | cohortTables |
| Retrieves the cdm reference into a local cdm. | collect.cdm_reference |
| To collect a 'cohort_table' object. | collect.cohort_table |
| Provide all combinations of strata levels. | combineStrata |
| Store results in a table. | compute.cdm_table |
| Drop a table from a cdm object. | dropSourceTable |
| Drop a table from a cdm object. | dropTable |
| Create an empty achilles table | emptyAchillesTable |
| Create an empty cdm_reference | emptyCdmReference |
| Empty 'codelist' object. | emptyCodelist |
| Empty 'codelist' object. | emptyCodelistWithDetails |
| Create an empty cohort_table object | emptyCohortTable |
| Create an empty omop table | emptyOmopTable |
| Empty 'summarised_result' object. | emptySummarisedResult |
| Choices that can be present in 'estimate_type' column. | estimateTypeChoices |
| Export a codelist object. | exportCodelist |
| Export a concept set expression. | exportConceptSetExpression |
| Export a summarised_result object to a csv file. | exportSummarisedResult |
| Get the cohort definition id of a certain name | getCohortId |
| Get the cohort name of a certain cohort definition id | getCohortName |
| Get the column name with the person identifier from a table (either subject_id or person_id), it will throw an error if it contains both or neither. | getPersonIdentifier |
| Import a codelist. | importCodelist |
| Import a concept set expression. | importConceptSetExpression |
| Import a set of summarised results. | importSummarisedResult |
| Convert a table that is not a cdm_table but have the same original source to a cdm_table. This Table is not meant to be used to insert tables in the cdm, please use insertTable instead. | insertFromSource |
| Insert a table to a cdm object. | insertTable |
| isResultSuppressed | isResultSuppressed |
| Check if a table is empty or not | isTableEmpty |
| List tables that can be accessed though a cdm object. | listSourceTables |
| Create an achilles table from a cdm_table. | newAchillesTable |
| 'cdm_reference' objects constructor | newCdmReference |
| Create a cdm source object. | newCdmSource |
| Create an cdm table. | newCdmTable |
| 'codelist' object constructor | newCodelist |
| 'codelist' object constructor | newCodelistWithDetails |
| 'cohort_table' objects constructor. | newCohortTable |
| 'conceptSetExpression' object constructor | newConceptSetExpression |
| A new local source for the cdm | newLocalSource |
| Create an omop table from a cdm table. | newOmopTable |
| 'summarised_results' object constructor | newSummarisedResult |
| Required columns that the standard tables in the OMOP Common Data Model must have. | omopColumns |
| Return a table of omop cdm fields informations | omopTableFields |
| Standard tables that a cdm reference can contain in the OMOP Common Data Model. | omopTables |
| It returns the participants that contributed to a particular analysis | participants |
| Print a CDM reference object | print.cdm_reference |
| Print a codelist | print.codelist |
| Print a codelist with details | print.codelist_with_details |
| Print a concept set expression | print.conceptSetExpression |
| Read a table from the cdm_source and add it to to the cdm. | readSourceTable |
| Update cohort attrition. | recordCohortAttrition |
| Required columns that the result tables must have. | resultColumns |
| Check if different packages version are used for summarise_results object | resultPackageVersion |
| Get settings from an object. | settings |
| Get cohort settings from a cohort_table object. | settings.cohort_table |
| Get settings from a summarised_result object. | settings.summarised_result |
| Get the source type of an object. | sourceType |
| Summary a cdm reference | summary.cdm_reference |
| Summary a generated cohort set | summary.cohort_table |
| Summary a summarised_result | summary.summarised_result |
| Function to suppress counts in result objects | suppress |
| Function to suppress counts in result objects | suppress.summarised_result |
| Get the table name of a 'cdm_table'. | tableName |
| Get the table source of a 'cdm_table'. | tableSource |
| Create a temporary prefix for tables, that contains a unique prefix that starts with tmp. | tmpPrefix |
| Convert a character vector to snake case | toSnakeCase |
| Get a unique Identifier with a certain number of characters and a prefix. | uniqueId |
| Create a unique table name | uniqueTableName |
| validateAgeGroupArgument | validateAgeGroupArgument |
| validateCdmArgument | validateCdmArgument |
| Validate a cohort table input. | validateCohortArgument |
| Validate cohortId argument. | validateCohortIdArgument |
| Validate conceptSet argument. | validateConceptSetArgument |
| Validate name argument. | validateNameArgument |
| Validate if two columns are valid Name-Level pair. | validateNameLevel |
| validateResultArgument | validateResultArguemnt |
| validateResultArgument | validateResultArgument |
| validateWindowArgument | validateWindowArgument |
