Package: octopucs 0.1.1

Roger Guevara

octopucs: Statistical Support for Hierarchical Clusters

Generates n hierarchical clustering hypotheses on subsets of classifiers (usually species in community ecology studies). The n clustering hypotheses are combined to generate a generalized cluster, and computes three metrics of support. 1) The average proportion of elements conforming the group in each of the n clusters (integrity). And 2) the contamination, i.e., the average proportion of elements from other groups that enter a focal group. 3) The probability of existence of the group gives the integrity and contamination in a Bayesian approach.

Authors:Roger Guevara [aut, cre], Ian MacGregor-Fors [aut]

octopucs_0.1.1.tar.gz
octopucs_0.1.1.tar.gz(r-4.5-noble)octopucs_0.1.1.tar.gz(r-4.4-noble)
octopucs_0.1.1.tgz(r-4.4-emscripten)octopucs_0.1.1.tgz(r-4.3-emscripten)
octopucs.pdf |octopucs.html✨
octopucs/json (API)

# Install 'octopucs' in R:
install.packages('octopucs', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.30 score 137 downloads 9 exports 22 dependencies

Last updated 8 months agofrom:977d83f83c. Checks:3 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 31 2025
R-4.5-linuxOKMar 31 2025
R-4.4-linuxOKMar 31 2025

Exports:compsim2draw.octopucsF1glzclusterglzcluster2glzcsIDsclusterIDscluster2octopucs

Dependencies:cliclustercrayongluehmslatticelifecyclemagrittrMASSMatrixmgcvnlmepermutepkgconfigprettyunitsprogressR6rlangstringistringrvctrsvegan

Citation

MacGregor-Fors I, Guevara R (2024). “Integrity and miss grouping as support for clusters in agglomerative hierarchicl methods: The R package octopucs.” bioRvix, 2024.08.01(1), 606070. doi:10.1101/2024.08.01.606070.

Corresponding BibTeX entry: 

  @Article{,
    title = {Integrity and miss grouping as support for clusters in
      agglomerative hierarchicl methods: The R package {octopucs}},
    author = {Ian MacGregor-Fors and Roger Guevara},
    year = {2024},
    journal = {bioRvix},
    volume = {2024.08.01},
    number = {1},
    pages = {606070},
    doi = {10.1101/2024.08.01.606070},
  }