Package: numOSL 2.8

Jun Peng

numOSL: Numeric Routines for Optically Stimulated Luminescence Dating

Optimizing regular numeric problems in optically stimulated luminescence dating, such as: equivalent dose calculation, dose rate determination, growth curve fitting, decay curve decomposition, statistical age model optimization, and statistical plot visualization.

Authors:Jun Peng [aut, cre], Bo Li [aut], Chunxin Wang [aut], Jorge More [ctb], Burton Garbow [ctb], Kenneth Hillstrom [ctb], John Burkardt [ctb], Paul Gilbert [ctb], Ravi Varadhan [ctb]

numOSL_2.8.tar.gz
numOSL_2.8.tar.gz(r-4.5-noble)numOSL_2.8.tar.gz(r-4.4-noble)
numOSL_2.8.tgz(r-4.4-emscripten)numOSL_2.8.tgz(r-4.3-emscripten)
numOSL.pdf |numOSL.html✨
numOSL/json (API)

# Install 'numOSL' in R:
install.packages('numOSL', repos = 'https://cloud.r-project.org')
Uses libs:
  • fortran– Runtime library for GNU Fortran applications
Datasets:
  • BIN - BIN data
  • EDdata - Equivalent dose values
  • SARdata - Data sets used for SAR equivalent dose calculation
  • Signaldata - Decay curves datasets

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

fortran

1.30 score 617 downloads 2 mentions 26 exports 0 dependencies

Last updated 1 years agofrom:edb476d57e. Checks:3 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 08 2025
R-4.5-linux-x86_64OKMar 08 2025
R-4.4-linux-x86_64OKMar 08 2025

Exports:analyseBINdataanalyseBINdata0as_analyseBINcalDAcalDAbatchcalEDcalRcyRcpcalSAREDcalSGCEDdbEDdecompfastEDfitGrowthloadBINdatalsNORMmcCAMmcFMMmcMAMoptimSAMpickBINdatapickSARdatapsRadialPlotRadialPlotterreportMCscaleSGCNsensSAM

Dependencies:

Citation

To cite package numOSL in publications use:

Peng J, Li B, Wang C (2023). numOSL: Numeric Routines for Optically Stimulated Luminescence Dating. R package version 2.8, https://CRAN.R-project.org/package=numOSL.

Peng J, Dong ZB, Han FQ, Long H, Liu XJ (2013). “R package numOSL: numeric routines for optically stimulated luminescence dating.” Ancient TL, 31(2), 41-48.

Peng J, Li B (2017). “Single-aliquot regenerative-dose (SAR) and standardised growth curve (SGC) equivalent dose determination in a batch model using the R package 'numOSL'.” Ancient TL, 35(2), 32-53.

Corresponding BibTeX entries: 

  @Manual{,
    title = {numOSL: Numeric Routines for Optically Stimulated
      Luminescence Dating},
    author = {Jun Peng and Bo Li and Chunxin Wang},
    year = {2023},
    note = {R package version 2.8},
    url = {https://CRAN.R-project.org/package=numOSL},
  }

  @Article{,
    title = {R package numOSL: numeric routines for optically
      stimulated luminescence dating},
    author = {Jun Peng and Zhi Bao Dong and Feng Qing Han and Hao Long
      and Xiang Jun Liu},
    year = {2013},
    journal = {Ancient TL},
    volume = {31(2)},
    pages = {41-48},
  }

  @Article{,
    title = {Single-aliquot regenerative-dose (SAR) and standardised
      growth curve (SGC) equivalent dose determination in a batch model
      using the R package 'numOSL'},
    author = {Jun Peng and Bo Li},
    year = {2017},
    journal = {Ancient TL},
    volume = {35(2)},
    pages = {32-53},
  }

Readme and manuals

Help Manual

Help pageTopics
Package for tackling basic numeric problems in optically stimulated luminescence datingnumOSL-package
BIN data analysisanalyseBINdata analyseBINdata.default analyseBINdata0 analyseBINdata0.default
Transfom SAR data sets into S3 class object "analyseBIN"as_analyseBIN as_analyseBIN.default
BIN dataBIN
Dose rate and age calculationcalDA calDA.default calDAbatch calDAbatch.default
Equivalent dose calculation and error assessmentcalED calED.default
Recycling ratio and recuperation calculationcalRcyRcp calRcyRcp.default
SAR equivalent doses calculation and selectioncalSARED calSARED.default
SGC Equivalent dose calculation and selectioncalSGCED calSGCED.default
De distribution summarizationdbED dbED.default
OSL decay curve decompositiondecomp decomp.default
Equivalent dose valuesEDdata
Fast-component equivalent dose calculationfastED fastED.default
Growth curve fittingfitGrowth fitGrowth.default
BIN file loading (importing)loadBINdata loadBINdata.default
Regenerative-dose signal optimization using the LS-normalisation procedurelsNORM lsNORM.default
Finite mixture age model optimization (using a Markov chain Monte Carlo method)mcCAM mcFMM mcFMM.default
Optimization of the minimum (maximum) age model (using a Markov chain Monte Carlo method)mcMAM mcMAM.default
Optimization of statistical age modelsoptimSAM optimSAM.default
BIN data set selectionpickBINdata pickBINdata.default
SAR data set selectionpickSARdata pickSARdata.default
Pseudo radial plot drawingpsRadialPlot psRadialPlot.default
Statistical age model optimization (with a Maximum Likelihood Estimation method)RadialPlotter RadialPlotter.default
Reporting MCMC outputs for statistical age modelsreportMC reportMC.default
Data sets used for SAR equivalent dose calculationSARdata
Natural-dose signal re-scalingscaleSGCN scaleSGCN.default
Investigate of the sensitivity of a statistical age model to the additional uncertainty (sigmab)sensSAM sensSAM.default
Decay curves datasetsSignaldata