Package: nichetools 0.3.3

Benjamin L. Hlina

nichetools: Complementary Package to 'nicheROVER' and 'SIBER'

Provides functions complementary to packages 'nicheROVER' and 'SIBER' allowing the user to extract Bayesian estimates from data objects created by the packages 'nicheROVER' and 'SIBER'. Please see the following publications for detailed methods on 'nicheROVER' and 'SIBER' Hansen et al. (2015) <doi:10.1890/14-0235.1>, Jackson et al. (2011) <do i:10.1111/j.1365-2656.2011.01806.x>, and Layman et al. (2007) <doi:10.1890/0012-9658(2007)88[42:CSIRPF]2.0.CO;2>, respectfully.

Authors:Benjamin L. Hlina [aut, cre]

nichetools_0.3.3.tar.gz
nichetools_0.3.3.tar.gz(r-4.7-any)nichetools_0.3.3.tar.gz(r-4.6-any)
nichetools_0.3.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
nichetools/json (API)
NEWS

# Install 'nichetools' in R:
install.packages('nichetools', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/benjaminhlina/nichetools/issues

Pkgdown/docs site:https://benjaminhlina.github.io

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • mu_est_long - A 'data.frame' containing posterior estimates of mu
  • niw_fish_post - A 'list' of the posterior estimates of mu and Sigma from '{nicheROVER}'
  • over_stat - A 'data.frame' containing the estimates of percentage of overlap among groups
  • post_sam_siber - A 'list' of the posterior estimates of mu and Sigma from '{SIBER}'
  • sigma_est_wide - A 'data.frame' containing posterior estimates of Sigma

On CRAN:

Conda:

jagscpp

3.26 score 18 scripts 523 downloads 9 exports 52 dependencies

Last updated from:df62fdcd59. Checks:4 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK273
source / vignettesOK213
linux-release-x86_64OK220
wasm-releaseOK127

Exports:create_comparisonsextract_group_metricsextract_laymanextract_muextract_niche_sizeextract_overlapextract_sigmaextract_similaritiesniche_ellipse

Dependencies:ashclicodacpp11dplyrellipsefarverFNNgenericsggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMatrixmclustmgcvmnormtmulticoolmvtnormnicheROVERnlmepillarpkgconfigpracmapurrrR6RColorBrewerRcpprjagsrlangS7scalesSIBERspatstat.utilsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

Using {nichetools} with nicheROVER

Benjamin L. Hlina

Rendered fromusing-nichetools-with-the-package-nicheROVER.Rmdusingknitr::rmarkdownon Jun 12 2026.

Last update: 2024-10-01
Started: 2024-06-08

Using {nichetools} with SIBER

Benjamin L. Hlina

Rendered fromusing-nichetools-with-the-package-SIBER.Rmdusingknitr::rmarkdownon Jun 12 2026.

Last update: 2024-10-01
Started: 2024-08-27