Package: nichetools 0.3.2

Benjamin L. Hlina

nichetools: Complementary Package to 'nicheROVER' and 'SIBER'

Provides functions complementary to packages 'nicheROVER' and 'SIBER' allowing the user to extract Bayesian estimates from data objects created by the packages 'nicheROVER' and 'SIBER'. Please see the following publications for detailed methods on 'nicheROVER' and 'SIBER' Hansen et al. (2015) <doi:10.1890/14-0235.1>, Jackson et al. (2011) <doi:10.1111/j.1365-2656.2011.01806.x>, and Layman et al. (2007) <doi:10.1890/0012-9658(2007)88[42:CSIRPF]2.0.CO;2>, respectfully.

Authors:Benjamin L. Hlina [aut, cre]

nichetools_0.3.2.tar.gz
nichetools_0.3.2.tar.gz(r-4.5-noble)nichetools_0.3.2.tar.gz(r-4.4-noble)
nichetools_0.3.2.tgz(r-4.4-emscripten)nichetools_0.3.2.tgz(r-4.3-emscripten)
nichetools.pdf |nichetools.html
nichetools/json (API)
NEWS

# Install 'nichetools' in R:
install.packages('nichetools', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/benjaminhlina/nichetools/issues

Pkgdown:https://benjaminhlina.github.io

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • mu_est_long - A 'data.frame' containing posterior estimates of mu
  • niw_fish_post - A 'list' of the posterior estimates of mu and Sigma from '{nicheROVER}'
  • over_stat - A 'data.frame' containing the estimates of percentage of overlap among groups
  • post_sam_siber - A 'list' of the posterior estimates of mu and Sigma from '{SIBER}'
  • sigma_est_wide - A 'data.frame' containing posterior estimates of Sigma

3.75 score 14 scripts 296 downloads 9 exports 60 dependencies

Last updated 2 months agofrom:3d3150ae0b. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-linuxOKOct 31 2024

Exports:create_comparisonsextract_group_metricsextract_laymanextract_muextract_niche_sizeextract_overlapextract_sigmaextract_similaritiesniche_ellipse

Dependencies:ashclicodacolorspacecpp11deldirdplyrellipsefansifarverFNNgenericsggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMASSMatrixmclustmgcvmnormtmulticoolmunsellmvtnormnicheROVERnlmepillarpkgconfigpolyclippracmapurrrR6RColorBrewerRcpprjagsrlangscalesSIBERspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

Using {nichetools} with nicheROVER

Rendered fromusing-nichetools-with-the-package-nicheROVER.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2024-10-01
Started: 2024-06-08

Using {nichetools} with SIBER

Rendered fromusing-nichetools-with-the-package-SIBER.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2024-10-01
Started: 2024-08-27