Package: newFocus 1.1
Ningning Xu
newFocus: True Discovery Guarantee by Combining Partial Closed Testings
Closed testing has been proved powerful for true discovery guarantee. The computation of closed testing is, however, quite burdensome. A general way to reduce computational complexity is to combine partial closed testings for some prespecified feature sets of interest. Partial closed testings are performed at Bonferroni-corrected alpha level to guarantee the lower bounds for the number of true discoveries in prespecified sets are simultaneously valid. For any post hoc chosen sets of interest, coherence property is used to get the lower bound. In this package, we implement closed testing with globaltest to calculate the lower bound for number of true discoveries, see Ningning Xu et.al (2021) <arxiv:2001.01541> for detailed description.
Authors:
newFocus_1.1.tar.gz
newFocus_1.1.tar.gz(r-4.5-noble)newFocus_1.1.tar.gz(r-4.4-noble)
newFocus_1.1.tgz(r-4.4-emscripten)newFocus_1.1.tgz(r-4.3-emscripten)
newFocus.pdf |newFocus.html✨
newFocus/json (API)
| # Install 'newFocus' in R: |
| install.packages('newFocus', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:c56a05e081. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 30 2024 |
| R-4.5-linux | OK | Aug 30 2024 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| True Discovery Guarantee by Combining Partial Closed Testings | newFocus-package |
| A set of focus set index | choosepath |
| Closed testing with branch and bound | ctbab |
| True discoveries | discov |
| The new focus level procedure | newFocus |
| True discoveries for non-focus level node | pick |