Package: neuroimaGene 0.1.1

Xavier Bledsoe

neuroimaGene: Transcriptomic Atlas of Neuroimaging Derived Phenotypes

Contains functions to query and visualize the Neuroimaging features associated with genetically regulated gene expression (GReX). The primary utility, neuroimaGene(), relies on a list of user-defined genes and returns a table of neuroimaging features (NIDPs) associated with each gene. This resource is designed to assist in the interpretation of genome-wide and transcriptome-wide association studies that evaluate brain related traits. Bledsoe (2024) <doi:10.1016/j.ajhg.2024.06.002>. In addition there are several visualization functions that generate summary plots and 2-dimensional visualizations of regional brain measures. Mowinckel (2020).

Authors:Xavier Bledsoe [aut, cre], Eric Gamazon [aut]

neuroimaGene_0.1.1.tar.gz
neuroimaGene_0.1.1.tar.gz(r-4.5-noble)neuroimaGene_0.1.1.tar.gz(r-4.4-noble)
neuroimaGene_0.1.1.tgz(r-4.4-emscripten)neuroimaGene_0.1.1.tgz(r-4.3-emscripten)
neuroimaGene.pdf |neuroimaGene.html
neuroimaGene/json (API)

# Install 'neuroimaGene' in R:
install.packages('neuroimaGene', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • anno - NIDP annotation data
  • fs_anno - NIDP freesurfer annotation data
  • ng_vignette - NeuroimaGene object for vignette illustration

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 1 scripts 219 downloads 7 exports 57 dependencies

Last updated 2 months agofrom:1a0b05f6d8. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 01 2024
R-4.5-linuxOKDec 01 2024

Exports:check_dblistNIDPsneuro_visneuroimaGeneplot_gnNIDPplot_gnsplot_nidps

Dependencies:bitbit64blobcachemclassclassIntclicolorspacecpp11data.tableDBIdplyre1071fansifarverfastmapgenericsggplot2ggseggluegtableisobandKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnlmepillarpkgconfigplogrproxypurrrR6RColorBrewerRcpprlangRSQLites2scalessfstringistringrtibbletidyrtidyselectunitsutf8vctrsviridisLitewithrwk

neuroimaGene

Rendered fromneuroimaGene.Rmdusingknitr::rmarkdownon Dec 01 2024.

Last update: 2024-09-21
Started: 2024-07-04