Package: neuroimaGene 0.1.1
Xavier Bledsoe
neuroimaGene: Transcriptomic Atlas of Neuroimaging Derived Phenotypes
Contains functions to query and visualize the Neuroimaging features associated with genetically regulated gene expression (GReX). The primary utility, neuroimaGene(), relies on a list of user-defined genes and returns a table of neuroimaging features (NIDPs) associated with each gene. This resource is designed to assist in the interpretation of genome-wide and transcriptome-wide association studies that evaluate brain related traits. Bledsoe (2024) <doi:10.1016/j.ajhg.2024.06.002>. In addition there are several visualization functions that generate summary plots and 2-dimensional visualizations of regional brain measures. Mowinckel (2020).
Authors:
neuroimaGene_0.1.1.tar.gz
neuroimaGene_0.1.1.tar.gz(r-4.5-noble)neuroimaGene_0.1.1.tar.gz(r-4.4-noble)
neuroimaGene_0.1.1.tgz(r-4.4-emscripten)neuroimaGene_0.1.1.tgz(r-4.3-emscripten)
neuroimaGene.pdf |neuroimaGene.html✨
neuroimaGene/json (API)
| # Install 'neuroimaGene' in R: |
| install.packages('neuroimaGene', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- anno - NIDP annotation data
- fs_anno - NIDP freesurfer annotation data
- ng_vignette - NeuroimaGene object for vignette illustration
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:1a0b05f6d8. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 01 2024 |
| R-4.5-linux | OK | Nov 01 2024 |
Exports:check_dblistNIDPsneuro_visneuroimaGeneplot_gnNIDPplot_gnsplot_nidps
Dependencies:bitbit64blobcachemclassclassIntclicolorspacecpp11data.tableDBIdplyre1071fansifarverfastmapgenericsggplot2ggseggluegtableisobandKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnlmepillarpkgconfigplogrproxypurrrR6RColorBrewerRcpprlangRSQLites2scalessfstringistringrtibbletidyrtidyselectunitsutf8vctrsviridisLitewithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| NIDP annotation data | anno |
| Check neuroimaGene database downloaded | check_db |
| NIDP freesurfer annotation data | fs_anno |
| List NIDPs | listNIDPs |
| 2D visualization plot of a neuroimaGene object | neuro_vis |
| Main neuroimaGene query | neuroimaGene |
| NeuroimaGene object for vignette illustration | ng_vignette |
| Gene by NIDP summary plot of neuroimaGene object | plot_gnNIDP |
| Gene summary plot of neuroimaGene object | plot_gns |
| NIDP summary plot of NeuroimaGene object | plot_nidps |