Package: neonUtilities 4.0.1

Claire Lunch

neonUtilities: Utilities for Working with NEON Data

NEON data packages can be accessed through the NEON Data Portal <https://www.neonscience.org> or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.

Authors:Claire Lunch [aut, cre, ctb], Christine Laney [aut, ctb], Nathan Mietkiewicz [aut, ctb], Eric Sokol [aut, ctb], Kaelin Cawley [aut, ctb], NEON [aut]

neonUtilities_4.0.1.tar.gz
neonUtilities_4.0.1.tar.gz(r-4.7-any)neonUtilities_4.0.1.tar.gz(r-4.6-any)
neonUtilities_4.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
neonUtilities/json (API)

# Install 'neonUtilities' in R:
install.packages('neonUtilities', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/neonscience/neon-utilities/issues

Datasets:

On CRAN:

Conda:

6.08 score 3 packages 1.3k scripts 1.1k downloads 3 mentions 31 exports 45 dependencies

Last updated from:2291cb4a36. Checks:4 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK144
source / vignettesOK207
linux-release-x86_64OK139
wasm-releaseOK148

Exports:byEventSIMbyFileAOPbyTileAOPconvByteSizedatasetQueryfootRastergetAvggetCitationgetDatatablegetHorVergetIssueLoggetNeonDOIgetPackagegetProductInfogetProductSensorsgetTaxonTablegetTimeIndexgetVarsEddyloadByProductqueryFilesreadTableNEONschemaFromVarschemaFromVarDuckstackByTablestackDataFilesDuckstackEddystackFromStoretokenDatetransformFileToGeoCSVzipsByProductzipsByURI

Dependencies:arrowaskpassassertthatbitbit64blobclicpp11curldata.tableDBIdbplyrdigestdownloaderdplyrduckdbduckdbfsfsgenericsgluehttrjosejsonlitelifecyclemagrittrmimeopensslpbapplypillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6rlangstringistringrsystibbletidyrtidyselectutf8vctrswithr

Readme and manuals

Help Manual

Help pageTopics
Get site management data by event type.byEventSIM
Serially download all AOP files for a given site, year, and productbyFileAOP
Download AOP tiles overlapping specified coordinates for a given site, year, and productbyTileAOP
Bundled chemistry data product informationchem_bundles
Query the query endpoint of the NEON API and create a duckdb dataset from the resultsdatasetQuery
Extract eddy covariance footprint data from HDF5 formatfootRaster
Get a list of the available averaging intervals for a data productgetAvg
Get a Bibtex citation for NEON data with a DOI, or generate a provisional Bibtex citationgetCitation
Get NEON data tablegetDatatable
Get the horizontal and vertical location indices for a given data product and sitegetHorVer
Get the issue log for a specific data productgetIssueLog
Get either a list of NEON DOIs, or the DOI for a specific data product and releasegetNeonDOI
Get NEON data packagegetPackage
Get NEON data product informationgetProductInfo
Get data product-sensor relationshipsgetProductSensors
Get NEON taxon tablegetTaxonTable
Get a list of the available time intervals for a data productgetTimeIndex
Extract list of eddy covariance tables from HDF5 filesgetVarsEddy
Get files from NEON API, stack tables, and load into the current environmentloadByProduct
Bundled vegetation and sediment data product informationother_bundles
Get a list of data files from the query endpoint of the NEON APIqueryFiles
Read a NEON data table with correct data types for each variablereadTableNEON
Create an arrow schema from a NEON variables file.schemaFromVar
Create a duckdb schema from a NEON variables file.schemaFromVarDuck
Terrestrial-aquatic shared data informationshared_aquatic
Flight coverage informationshared_flights
Join data files in a zipped NEON data package by table typestackByTable
Align data files into a duckdb datasetstackDataFilesDuck
Extract eddy covariance data from HDF5 formatstackEddy
Select files from a stored set of NEON data, created by neonstore package methods or another methodstackFromStore
Publication table informationtable_types
Get expiration date for a NEON API tokentokenDate
Transform NEON CSV file to GeoCSVtransformFileToGeoCSV
Get files from NEON API to feed the stackByTable() functionzipsByProduct
Get files from NEON ECS Bucket using URLs in stacked datazipsByURI