Package: mvSLOUCH 2.7.6

Krzysztof Bartoszek
mvSLOUCH: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F. Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005>. The suggested PCMBaseCpp package (which significantly speeds up the likelihood calculations) can be obtained from <https://github.com/venelin/PCMBaseCpp/>.
Authors:
mvSLOUCH_2.7.6.tar.gz
mvSLOUCH_2.7.6.tar.gz(r-4.5-noble)mvSLOUCH_2.7.6.tar.gz(r-4.4-noble)
mvSLOUCH_2.7.6.tgz(r-4.4-emscripten)mvSLOUCH_2.7.6.tgz(r-4.3-emscripten)
mvSLOUCH.pdf |mvSLOUCH.html✨
mvSLOUCH/json (API)
# Install 'mvSLOUCH' in R: |
install.packages('mvSLOUCH', repos = 'https://cloud.r-project.org') |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:3324f833b1. Checks:2 OK, 1 NOTE. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 15 2025 |
R-4.5-linux | NOTE | Mar 15 2025 |
R-4.4-linux | OK | Mar 15 2025 |
Exports:BrownianMotionModeldrawPhylProcessestimate.evolutionary.modelfitch.mvslgenerate.model.setupsmvslouchModelOU_phylregOU_RSSOU_xVzouchModelparametric.bootstrapphyltree_pathsplot.clustered_phylosimulate_clustered_phylogenysimulBMProcPhylTreesimulMVSLOUCHProcPhylTreesimulOUCHProcPhylTreeSummarizeBMSummarizeMVSLOUCHSummarizeOUCH
Dependencies:abindapeclicolorspacedata.tabledigestexpmfansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixcalcmgcvmunsellmvtnormnlmeouchPCMBasepillarpkgconfigR6RColorBrewerRcpprlangscalessubplextibbleutf8vctrsviridisLitewithrxtable
Citation
To cite mvSLOUCH in publications, please use
Bartoszek K., Pienaar J., Mostad P., Andersson S., and Hansen, T. F., A phylogenetic comparative method for studying multivariate adaptation, J. Theor. Biol., 2012, 314:204-215
Bartoszek K., Fuentes-Gonzalez J., Mitov V., Pienaar J., Piwczynski M., Puchalka R., Spalik K., and Voje K. L., Model Selection Performance in Phylogenetic Comparative Methods Under Multivariate Ornstein-Uhlenbeck Models of Trait Evolution, Syst. Biol., 2023, 72(2):275-293
Corresponding BibTeX entries:
@Article{, author = {K. Bartoszek and J. Pienaar and P. Mostad and S. Andersson and T. F. Hansen}, title = {A phylogenetic comparative method for studying multivariate adaptation}, journal = {Journal of Theoretical Biology}, year = {2012}, volume = {314}, pages = {204--215}, doi = {10.1016/j.jtbi.2012.08.005}, }
@Article{, author = {K. Bartoszek and J. {Fuentes-Gonz{'a}lez} and V. Mitov and J. Pienaar and M. Piwczy{'n}ski and R. Puchalka and K. Spalik and K. L. Voje}, title = {Model Selection Performance in Phylogenetic Comparative Methods Under Multivariate {O}rnstein--{U}hlenbeck Models of Trait Evolution}, journal = {Systematic Biology}, year = {2023}, volume = {72}, issue = {2}, pages = {275--293}, doi = {10.1093/sysbio/syac079}, }