Package: monolix2rx 0.0.4

Matthew Fidler

monolix2rx: Converts 'Monolix' Models to 'rxode2'

'Monolix' is a tool for running mixed effects model using 'saem'. This tool allows you to convert 'Monolix' models to 'rxode2' (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) using the form compatible with 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>). If available, the 'rxode2' model will read in the 'Monolix' data and compare the simulation for the population model individual model and residual model to immediately show how well the translation is performing. This saves the model development time for people who are creating an 'rxode2' model manually. Additionally, this package reads in all the information to allow simulation with uncertainty (that is the number of observations, the number of subjects, and the covariance matrix) with a 'rxode2' model. This is complementary to the 'babelmixr2' package that translates 'nlmixr2' models to 'Monolix' and can convert the objects converted from 'monolix2rx' to a full 'nlmixr2' fit. While not required, you can get/install the 'lixoftConnectors' package in the 'Monolix' installation, as described at the following url <https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization>. When 'lixoftConnectors' is available, 'Monolix' can be used to load its model library instead manually setting up text files (which only works with old versions of 'Monolix').

Authors:Matthew Fidler [aut, cre], Justin Wilkins [ctb]

monolix2rx_0.0.4.tar.gz
monolix2rx_0.0.4.tar.gz(r-4.5-noble)monolix2rx_0.0.4.tar.gz(r-4.4-noble)
monolix2rx_0.0.4.tgz(r-4.4-emscripten)monolix2rx_0.0.4.tgz(r-4.3-emscripten)
monolix2rx.pdf |monolix2rx.html
monolix2rx/json (API)
NEWS

# Install 'monolix2rx' in R:
install.packages('monolix2rx', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/nlmixr2/monolix2rx/issues

Pkgdown:https://nlmixr2.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

cpp

2.80 score 1 packages 14 scripts 844 downloads 20 exports 63 dependencies

Last updated 16 days agofrom:8547bfec79. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-linux-x86_64OKNov 29 2024

Exports:.getNbdoses.getStiff.monolixGetMlxtran%>%autoplotexpitinilogitlotrimlxtranmlxTxtmodelmodel<-monolix2rxrxodeRxODErxode2rxRenamerxSolverxUiGet

Dependencies:backportsBHcachemcheckmateclicolorspacecpp11cpp11armadillocrayondata.tabledigestdparserfansifarverfastmapggforceggplot2gluegtableinlineisobandlabelinglatticelazyevallifecyclelotrimagrittrMASSMatrixmemoisemgcvmunsellnlmepillarpkgconfigpolyclipPreciseSumsqsR6RApiSerializeRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelrexrlangrxode2rxode2llscalessitmoStanHeadersstringfishstringisyssystemfontstibbletidyselecttweenrutf8vctrsviridisLitewithr