Package: minimapR 0.0.1.0

Jake Reed

minimapR: Wrapper for 'minimap2'

Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <[email protected]>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. If using a Windows operating system, installation of the 'MSYS2' Linux emulator is required. 3. If using a Mac operating system, installation of 'Homebrew' is required. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".

Authors:Jake Reed [aut, cre], Pradyun Pulipaka [ctb]

minimapR_0.0.1.0.tar.gz
minimapR_0.0.1.0.tar.gz(r-4.5-noble)minimapR_0.0.1.0.tar.gz(r-4.4-noble)
minimapR_0.0.1.0.tgz(r-4.4-emscripten)minimapR_0.0.1.0.tgz(r-4.3-emscripten)
minimapR.pdf |minimapR.html✨
minimapR/json (API)

Peer review:

Bug tracker:https://github.com/jake-bioinfo/minimapr/issues

6 exports 0.09 score 65 dependencies 226 downloads

Last updated 2 months agofrom:7d69ed91b8. Checks:OK: 2. Indexed: no.

Exports:minimap2minimap2_checkminimap2_installationmm2_installsamtools_checksamtools_install

Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscolorspacecpp11crayoncurldplyrfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2git2rgluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpafrpillarpkgconfigR6RColorBrewerRhtslibrlangRsamtoolsS4VectorsscalessnowstringistringrsystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc