Package: miLAG 1.0.4
miLAG: Calculates Microbial Lag Duration (on the Population Level) from Provided Growth Curve Data
Microbial growth is often measured by growth curves i.e. a table of population sizes and times of measurements. This package allows to use such growth curve data to determine the duration of "microbial lag phase" i.e. the time needed for microbes to restart divisions. It implements the most commonly used methods to calculate the lag duration, these methods are discussed and described in Opalek et.al. 2022. Citation: "How to determine microbial lag phase duration?", M. Opalek, B. Smug, D. Wloch-Salamon (2022) <doi:10.1101/2022.11.16.516631>.
Authors:
miLAG_1.0.4.tar.gz
miLAG_1.0.4.tar.gz(r-4.5-noble)miLAG_1.0.4.tar.gz(r-4.4-noble)
miLAG_1.0.4.tgz(r-4.4-emscripten)miLAG_1.0.4.tgz(r-4.3-emscripten)
miLAG.pdf |miLAG.html✨
miLAG/json (API)
# Install 'miLAG' in R: |
install.packages('miLAG', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 months agofrom:cac0556f4a. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 05 2024 |
R-4.5-linux | OK | Dec 05 2024 |
Exports:calc_lagcut_the_datafit_exp_lagfit_max_infl_lagget_all_methods_lagget_def_parsget_lagget_themelag_biomass_incrmake_grwoth_curve_dfplot_dataplot_lag_fitsmooth_data
Dependencies:briocallrclicolorspacecrayondescdiffobjdigestdplyrevaluatefansifarverfsgenericsggplot2gluegtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmenlsMicrobionlstoolspillarpkgbuildpkgconfigpkgloadpraiseprocessxpsR6RColorBrewerrlangrprojrootscalestestthattibbletidyselectutf8vctrsviridisLitewaldowithr
Calculating Lags for Growth Models
Rendered fromcalculating_lag.rmd
usingknitr::rmarkdown
on Dec 05 2024.Last update: 2023-11-18
Started: 2023-11-18
Choosing Lag Fit Algorithms in Growth Modeling
Rendered fromchoosing_lag.Rmd
usingknitr::rmarkdown
on Dec 05 2024.Last update: 2023-11-18
Started: 2023-11-18
Getting Initial Parameters for Growth Models
Rendered fromgetting_lag.rmd
usingknitr::rmarkdown
on Dec 05 2024.Last update: 2023-11-18
Started: 2023-11-18
Plotting Lag Fit
Rendered fromplotting_lag.rmd
usingknitr::rmarkdown
on Dec 05 2024.Last update: 2023-11-18
Started: 2023-11-18