Introductions | Other Demos | Call by files | Call by R data frames | Example: MethylKit | Example: BiSeq | Example: DMRfinder | Example: Metilene | Example: Other DNA methylation tools | Example: RNA-seq data | Misc | Demo data | Input Data Examples: MethylKit | Input Data Examples: BiSeq | Input Data Examples: DMRfinder | Input Data Examples: Metilene | Input Data Examples: Other DNA methylation tools | Input Data Examples: RNA-seq data
Package: metevalue 0.2.4
Yifan Yang
metevalue: E-Value in the Omics Data Association Studies
In the omics data association studies, it is common to conduct the p-value corrections to control the false significance. Beyond the P-value corrections, E-value is recently studied to facilitate multiple testing correction based on V. Vovk and R. Wang (2021) <doi:10.1214/20-AOS2020>. This package provides E-value calculation for DNA methylation data and RNA-seq data. Currently, five data formats are supported: DNA methylation levels using DMR detection tools (BiSeq, DMRfinder, MethylKit, Metilene and other DNA methylation tools) and RNA-seq data. The relevant references are listed below: Katja Hebestreit and Hans-Ulrich Klein (2022) <doi:10.18129/B9.bioc.BiSeq>; Altuna Akalin et.al (2012) <doi:10.18129/B9.bioc.methylKit>.
Authors:
metevalue_0.2.4.tar.gz
metevalue_0.2.4.tar.gz(r-4.7-any)metevalue_0.2.4.tar.gz(r-4.6-any)
metevalue_0.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
metevalue/json (API)
| # Install 'metevalue' in R: |
| install.packages('metevalue', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- demo_biseq_DMR - BiSeq Output Demo Dataset
- demo_biseq_methyrate - BiSeq Methyrate Demo Dataset
- demo_desq_out - DESeq Output Dataset
- demo_DMRfinder_DMRs - DMRfinder Output Demo Dataset
- demo_DMRfinder_rate_combine - DMRfinder Methyrate Demo Dataset
- demo_methylkit_met_all - Methyrate output dataset from methylKit
- demo_methylkit_methyrate - Methyrate Dataset
- demo_metilene_input - Metilene Methyrate Demo Dataset
- demo_metilene_out - Metilene Demo Output Dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:3d1acbdc40. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 197 | ||
| source / vignettes | OK | 195 | ||
| linux-release-x86_64 | OK | 146 | ||
| wasm-release | OK | 123 |
Exports:evalue_buildin_sqlevalue_buildin_var_fmt_nmmetevalue.biseqmetevalue.biseq.chkmetevalue.DMRfindermetevalue.DMRfinder.chkmetevalue.methylKitmetevalue.methylKit.chkmetevalue.metilenemetevalue.metilene.chkmetevalue.RNA_generalvarevalue.metilenevarevalue.single_general
Dependencies:bitbit64blobcachemchronclicpp11DBIdplyrfastmapgenericsglueGPArotationgsubfnlatticelifecyclemagrittrmemoisemnormtnlmepillarpkgconfigprotopsychR6rlangRSQLitesqldftibbletidyselectutf8vctrswithr
