Package: metevalue 0.2.4

Yifan Yang

metevalue: E-Value in the Omics Data Association Studies

In the omics data association studies, it is common to conduct the p-value corrections to control the false significance. Beyond the P-value corrections, E-value is recently studied to facilitate multiple testing correction based on V. Vovk and R. Wang (2021) <doi:10.1214/20-AOS2020>. This package provides E-value calculation for DNA methylation data and RNA-seq data. Currently, five data formats are supported: DNA methylation levels using DMR detection tools (BiSeq, DMRfinder, MethylKit, Metilene and other DNA methylation tools) and RNA-seq data. The relevant references are listed below: Katja Hebestreit and Hans-Ulrich Klein (2022) <doi:10.18129/B9.bioc.BiSeq>; Altuna Akalin et.al (2012) <doi:10.18129/B9.bioc.methylKit>.

Authors:Yifan Yang [aut, cre, cph], Xiaoqing Pan [aut], Haoyuan Liu [aut]

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metevalue.pdf |metevalue.html✨
metevalue/json (API)

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13 exports 0.00 score 35 dependencies 2 scripts 238 downloads

Last updated 1 years agofrom:3d1acbdc40. Checks:OK: 2. Indexed: yes.

Exports:evalue_buildin_sqlevalue_buildin_var_fmt_nmmetevalue.biseqmetevalue.biseq.chkmetevalue.DMRfindermetevalue.DMRfinder.chkmetevalue.methylKitmetevalue.methylKit.chkmetevalue.metilenemetevalue.metilene.chkmetevalue.RNA_generalvarevalue.metilenevarevalue.single_general

Dependencies:bitbit64blobcachemchronclicpp11DBIdplyrfansifastmapgenericsglueGPArotationgsubfnlatticelifecyclemagrittrmemoisemnormtnlmepillarpkgconfigplogrprotopsychR6rlangRSQLitesqldftibbletidyselectutf8vctrswithr