Package: metaumbrella 1.0.11

Corentin J Gosling

metaumbrella: Umbrella Review Package for R

A comprehensive range of facilities to perform umbrella reviews with stratification of the evidence in R. The package accomplishes this aim by building on three core functions that: (i) automatically perform all required calculations in an umbrella review (including but not limited to meta-analyses), (ii) stratify evidence according to various classification criteria, and (iii) generate a visual representation of the results. Note that if you are not familiar with R, the core features of this package are available from a web browser (<https://www.metaumbrella.org/>).

Authors:Corentin J Gosling [aut, cre], Aleix Solanes [aut], Paolo Fusar-Poli [aut], Joaquim Radua [aut]

metaumbrella_1.0.11.tar.gz
metaumbrella_1.0.11.tar.gz(r-4.5-noble)metaumbrella_1.0.11.tar.gz(r-4.4-noble)
metaumbrella_1.0.11.tgz(r-4.4-emscripten)metaumbrella_1.0.11.tgz(r-4.3-emscripten)
metaumbrella.pdf |metaumbrella.html✨
metaumbrella/json (API)
NEWS

# Install 'metaumbrella' in R:
install.packages('metaumbrella', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • df.HR - Meta-analyses exploring the efficacy of several interventions on a binary outcome.
  • df.IRR - Meta-analysis exploring adverse events of smoking.
  • df.OR - Meta-analyses exploring a risk factor for neurodevelopmental disorders.
  • df.OR.multi - Meta-analysis of RCTs assessing different dietary interventions on a binary outcome.
  • df.R - Meta-analyses of correlational data
  • df.RR - Meta-analysis of the adverse events of antidepressants.
  • df.SMC - Meta-analyses exploring the efficacy of an intervention on a continuous outcome measured before and after the intervention.
  • df.SMD - Meta-analyses exploring the efficacy of surgical and pharmacological interventions.
  • df.radua2019 - Meta-analyses exploring the risk factors for posttraumatic stress disorder.
  • df.train - Training dataset

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

14 exports 9 stars 1.24 score 57 dependencies 9 scripts 388 downloads

Last updated 6 months agofrom:0ef830f427. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 05 2024
R-4.5-linuxOKSep 05 2024

Exports:add.evidencedrop.evidenceesb.testforestforest.data.frameforest.umbrellaoverlap.primsubset.umbrellasummary.umbrellaumbrellaumbrella.guiumbrella.xlsunion.umbrellaview.errors.umbrella

Dependencies:bitbit64bootcellrangerclicliprCompQuadFormcpp11crayondplyrfansigenericsgluehmslatticelifecyclelme4magrittrMASSmathjaxrMatrixmetametadatmetaforminqanlmenloptrnumDerivpbapplypillarpkgconfigpowerSurvEpipracmaprettyunitsprogresspurrrpwrR6RcppRcppEigenreadrreadxlrematchrlangstringistringrsurvivaltibbletidyselecttzdbutf8vctrsvroomwithrwritexlxml2xtable

Vignette 1: prepare a well-formatted dataset with metaumbrella

Corentin J. Gosling^a^, Aleix Solanes^a^, Paolo Fusar-Poli & Joaquim Radua

Rendered fromformat-dataset.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2022-06-13
Started: 2022-06-09

Vignette 2: conduct an umbrella review with metaumbrella

Corentin J. Gosling^a^, Aleix Solanes^a^, Paolo Fusar-Poli & Joaquim Radua

Rendered fromconduct-umbrella.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2023-11-06
Started: 2022-06-09

Vignette 3: create a forest plot for an umbrella review with metaumbrella

Corentin J. Gosling^a^, Aleix Solanes^a^, Paolo Fusar-Poli & Joaquim Radua

Rendered fromgenerate-forest.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2023-11-06
Started: 2022-06-09

Vignette 4: Details on calculations made by metaumbrella

Corentin J. Gosling^a^, Aleix Solanes^a^, Paolo Fusar-Poli & Joaquim Radua

Rendered fromcalculations-details.Rmdusingknitr::rmarkdownon Sep 05 2024.

Last update: 2023-07-01
Started: 2022-06-09

Readme and manuals

Help Manual

Help pageTopics
metaumbrella: An Umbrella Review Package for Rmetaumbrella-package
Add evidence classes to "umbrella" objectsadd.evidence
Meta-analyses exploring the efficacy of several interventions on a binary outcome.df.HR
Meta-analysis exploring adverse events of smoking.df.IRR
Meta-analyses exploring a risk factor for neurodevelopmental disorders.df.OR
Meta-analysis of RCTs assessing different dietary interventions on a binary outcome.df.OR.multi
Meta-analyses of correlational datadf.R
Meta-analyses exploring the risk factors for posttraumatic stress disorder.df.radua2019
Meta-analysis of the adverse events of antidepressants.df.RR
Meta-analyses exploring the efficacy of an intervention on a continuous outcome measured before and after the intervention.df.SMC
Meta-analyses exploring the efficacy of surgical and pharmacological interventions.df.SMD
Training datasetdf.train
Remove evidence classes from an object of class "umbrella"drop.evidence
Perform some tests for excess of significanceesb.test
Forest plots for objects of class "umbrella" or "data.frame"forest
Forest plots for "umbrella" objectsforest.umbrella
Overlap in primary studies across reviewsoverlap.prim
Print a summary of an object of class "umbrella"print.umbrella
Create a subset of an object of class "umbrella"subset.umbrella
Synthesize information of an object of class "umbrella" in a dataframesummary.umbrella
Conduct the calculations for an umbrella reviewumbrella
Graphical User Interface for conducting an umbrella reviewumbrella.gui
Automatically conduct an umbrella review and export results outside of Rumbrella.xls
Union of two objects of class "umbrella"union.umbrella
Detect incorrect formatting of a datasetview.errors.umbrella