Package: medExtractR 0.4.1
Leena Choi
medExtractR: Extraction of Medication Information from Clinical Text
Function and support for medication and dosing information extraction from free-text clinical notes. Medication entities for the basic medExtractR implementation that can be extracted include drug name, strength, dose amount, dose, frequency, intake time, dose change, and time of last dose. The basic medExtractR is outlined in Weeks, Beck, McNeer, Williams, Bejan, Denny, Choi (2020) <doi:10.1093/jamia/ocz207>. The extended medExtractR_tapering implementation is intended to extract dosing information for more tapering schedules, which are far more complex. The tapering extension allows for the extraction of additional entities including dispense amount, refills, dose schedule, time keyword, transition, and preposition.
Authors:
medExtractR_0.4.1.tar.gz
medExtractR_0.4.1.tar.gz(r-4.5-noble)medExtractR_0.4.1.tar.gz(r-4.4-noble)
medExtractR_0.4.1.tgz(r-4.4-emscripten)medExtractR_0.4.1.tgz(r-4.3-emscripten)
medExtractR.pdf |medExtractR.html✨
medExtractR/json (API)
NEWS
| # Install 'medExtractR' in R: |
| install.packages('medExtractR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- addl_expr - Additional expressions for 'drug_list'
- dosechange_vals - Keywords Specifying Dose Change
- doseschedule_vals - Keywords Specifying Dose Schedule
- duration_vals - Keywords Specifying Duration
- frequency_vals - Keywords Specifying Frequency
- intaketime_vals - Keywords Specifying Intake Time
- preposition_vals - Keywords Specifying Preposition
- route_vals - Keywords Specifying Route
- rxnorm_druglist - List of Medications
- time_regex - Keywords Specifying Time Expressions
- timekeyword_vals - Keywords Specifying Time Keyword
- transition_vals - Keywords/Symbols Specifying Transition
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:dab82684d5. Checks:OK: 1 WARNING: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 21 2024 |
| R-4.5-linux | WARNING | Dec 21 2024 |
Exports:extract_entitiesextract_entities_taperingextract_genericextract_lastdosemedExtractRmedExtractR_taperingstring_countsstring_occursstring_suggestions
Dependencies:cligluelifecyclemagrittrrlangstringistringrvctrs
medExtractR Vignette
Rendered frommxr_basic_vignette.Rmdusingknitr::rmarkdownon Dec 21 2024.Last update: 2022-04-04
Started: 2021-06-06
medExtractR_tapering Vignette
Rendered frommxr_tapering_vignette.Rmdusingknitr::rmarkdownon Dec 21 2024.Last update: 2022-04-04
Started: 2021-06-06
Customizing drug_list
Rendered frommxr_drug_list.Rmdusingknitr::rmarkdownon Dec 21 2024.Last update: 2022-04-04
Started: 2022-04-04
