Package: medExtractR 0.4.1

Leena Choi

medExtractR: Extraction of Medication Information from Clinical Text

Function and support for medication and dosing information extraction from free-text clinical notes. Medication entities for the basic medExtractR implementation that can be extracted include drug name, strength, dose amount, dose, frequency, intake time, dose change, and time of last dose. The basic medExtractR is outlined in Weeks, Beck, McNeer, Williams, Bejan, Denny, Choi (2020) <doi:10.1093/jamia/ocz207>. The extended medExtractR_tapering implementation is intended to extract dosing information for more tapering schedules, which are far more complex. The tapering extension allows for the extraction of additional entities including dispense amount, refills, dose schedule, time keyword, transition, and preposition.

Authors:Leena Choi [aut, cre], Cole Beck [aut], Hannah Weeks [aut]

medExtractR_0.4.1.tar.gz
medExtractR_0.4.1.tar.gz(r-4.7-any)medExtractR_0.4.1.tar.gz(r-4.6-any)
medExtractR_0.4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
medExtractR/json (API)

# Install 'medExtractR' in R:
install.packages('medExtractR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.26 score 12 scripts 341 downloads 9 exports 8 dependencies

Last updated from:dab82684d5. Checks:2 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING181
source / vignettesOK305
linux-release-x86_64WARNING174
wasm-releaseOK109

Exports:extract_entitiesextract_entities_taperingextract_genericextract_lastdosemedExtractRmedExtractR_taperingstring_countsstring_occursstring_suggestions

Dependencies:cligluelifecyclemagrittrrlangstringistringrvctrs

medExtractR Vignette
Introduction | Basic medExtractR | Running medExtractR | Tuning the medExtractR system | References

Last update: 2022-04-04
Started: 2021-06-06

medExtractR_tapering Vignette
Introduction | Tapering extension to medExtractR | medExtractR_tapering development | Details of medExtractR_tapering functionality | References

Last update: 2022-04-04
Started: 2021-06-06

Customizing drug_list
References

Last update: 2022-04-04
Started: 2022-04-04