Package: mbmixture 0.6

Karl W Broman

mbmixture: Microbiome Mixture Analysis

Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.

Authors:Karl W Broman [aut, cre]

mbmixture_0.6.tar.gz
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mbmixture.pdf |mbmixture.html
mbmixture/json (API)
NEWS

# Install 'mbmixture' in R:
install.packages('mbmixture', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kbroman/mbmixture/issues

Datasets:
  • mbmixdata - Example dataset for mbmixture package

2.70 score 5 scripts 151 downloads 6 exports 1 dependencies

Last updated 29 days agofrom:11b28bd4e6. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 28 2024
R-4.5-linuxOKNov 28 2024

Exports:bootstrapNullbootstrapSEmbmix_loglikmle_emle_pmle_pe

Dependencies:numDeriv

R/mbmixture User Guide

Rendered frommbmixture.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-11-27
Started: 2020-10-22