Package: matrixcut 0.0.1

Matthew Cserhati

matrixcut: Determines Clustering Threshold Based on Similarity Values

The user must supply a matrix filled with similarity values. The software will search for significant differences between similarity values at different hierarchical levels. The algorithm will return a Loess-smoothed plot of the similarity values along with the inflection point, if there are any. There is the option to search for an inflection point within a specified range. The package also has a function that will return the matrix components at a specified cutoff. References: Mullner. <arxiv:1109.2378>; Cserhati, Carter. (2020, Journal of Creation 34(3):41-50), <https://dl0.creation.com/articles/p137/c13759/j34-3_64-73.pdf>.

Authors:Matthew Cserhati [aut, cre]

matrixcut_0.0.1.tar.gz
matrixcut_0.0.1.tar.gz(r-4.5-noble)matrixcut_0.0.1.tar.gz(r-4.4-noble)
matrixcut_0.0.1.tgz(r-4.4-emscripten)matrixcut_0.0.1.tgz(r-4.3-emscripten)
matrixcut.pdf |matrixcut.html✨
matrixcut/json (API)

# Install 'matrixcut' in R:
install.packages('matrixcut', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • liliales - Chloroplast genome sequence similarity matrix for 163 Liliales species
  • primates - Mitochondrial genome sequence similarity matrix for 31 primate species
  • xenarthra - Mitochondrial genome sequence similarity matrix for 37 Xenarthra species

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 184 downloads 3 exports 12 dependencies

Last updated 2 years agofrom:166ead0463. Checks:OK: 1 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 21 2024
R-4.5-linuxNOTENov 21 2024

Exports:componentplotcutoffplotmatrixcut

Dependencies:clicpp11glueigraphinflectionlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs