Package: markerpen 0.1.2

Yixuan Qiu

markerpen: Marker Gene Detection via Penalized Principal Component Analysis

Implementation of the 'MarkerPen' algorithm, short for marker gene detection via penalized principal component analysis, described in the paper by Qiu, Wang, Lei, and Roeder (2021, <doi:10.1093/bioinformatics/btab257>). 'MarkerPen' is a semi-supervised algorithm for detecting marker genes by combining prior marker information with bulk transcriptome data.

Authors:Yixuan Qiu [aut, cre], Jiebiao Wang [aut], Jing Lei [aut], Kathryn Roeder [aut]

markerpen_0.1.2.tar.gz
markerpen_0.1.2.tar.gz(r-4.7-arm64)markerpen_0.1.2.tar.gz(r-4.7-x86_64)markerpen_0.1.2.tar.gz(r-4.6-arm64)markerpen_0.1.2.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
markerpen/json (API)
NEWS

# Install 'markerpen' in R:
install.packages('markerpen', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascppopenmp

2.70 score 4 scripts 205 downloads 3 exports 5 dependencies

Last updated from:fe23f3dd8c. Checks:5 OK, 1 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK147
linux-devel-x86_64OK186
source / vignettesOK237
linux-release-arm64OK169
linux-release-x86_64OK137
wasm-releaseFAIL126

Exports:pca_penrefine_markerssort_markers

Dependencies:latticeMatrixRcppRcppEigenRSpectra

MarkerPen: Marker Gene Detection via Penalized Principal Component Analysis

Yixuan Qiu, Jiebiao Wang, Jing Lei, and Kathryn Roeder

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Jun 12 2026.

Last update: 2025-12-14
Started: 2021-03-11