Package: ludic 0.2.0
Boris P Hejblum
ludic: Linkage Using Diagnosis Codes
Probabilistic record linkage without direct identifiers using only diagnosis codes. Method is detailed in: Hejblum, Weber, Liao, Palmer, Churchill, Szolovits, Murphy, Kohane & Cai (2019) <doi:10.1038/sdata.2018.298> ; Zhang, Hejblum, Weber, Palmer, Churchill, Szolovits, Murphy, Liao, Kohane & Cai (2021) <doi:10.1101/2021.05.02.21256490>.
Authors:
ludic_0.2.0.tar.gz
ludic_0.2.0.tar.gz(r-4.5-noble)ludic_0.2.0.tar.gz(r-4.4-noble)
ludic_0.2.0.tgz(r-4.4-emscripten)ludic_0.2.0.tgz(r-4.3-emscripten)
ludic.pdf |ludic.html✨
ludic/json (API)
NEWS
| # Install 'ludic' in R: |
| install.packages('ludic', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/borishejblum/ludic/issues
- RA1_11y - Anonymized binarized diagnosis codes from RA study.
- RA1_6y - Anonymized binarized diagnosis codes from RA study.
- RA2_11y - Anonymized binarized diagnosis codes from RA study.
- RA2_6y - Anonymized binarized diagnosis codes from RA study.
- silverstandard_truematches - Anonymized binarized diagnosis codes from RA study.
Last updated 3 years agofrom:245b3ba649. Checks:OK: 1 NOTE: 1. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 08 2024 |
| R-4.5-linux-x86_64 | NOTE | Nov 08 2024 |
Exports:agree_Cagree_C_sparseatlascomb_pvalsem_winklerem_winkler_bigexpitexpit_dev1logitloglikC_binloglikC_bin_wDatesloglikratioC_diff_arbitrarymatchingScore_CmatchingScore_C_sparse_bigmatchProbs_rank_full_Cpval_zscorerecordLinkstrsplitCtest_han2018
Dependencies:cvarfastICAfBasicsfGarchgbutilsgsslandpredlatticeMASSMatrixrbibutilsRcppRcppArmadilloRdpackrootSolvespatialstabledistsurvivaltimeDatetimeSeries
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ludic | ludic-package ludic |
| Fast C++ implementation of agreement vector for the element-wise comparison of 2 matrices | agree_C agree_C_sparse |
| Association testing by combining several matching thresholds | atlas |
| Fisher's rule for combining several p-values | comb_pvals |
| Implementation of Winkler's EM algorithm for Fellegi-Sunter matching method | em_winkler em_winkler_big |
| C++ implementation of the pseudo-likelihood computation | loglikC_bin loglikC_bin_wDates loglikratioC_diff_arbitrary |
| Fast C++ computation of the final posterior probabilities in the E-M Winkler's method | matchingScore_C matchingScore_C_sparse_big |
| Compute the matching probabilities for each pair of observations | matchProbs_rank_full_C |
| Compute p-values for a Z-score | pval_zscore |
| Anonymized binarized diagnosis codes from RA study. | RA RA1_11y RA1_6y RA2_11y RA2_6y silverstandard_truematches |
| Probabilistic Patient Record Linkage | recordLink |
| Association testing using Han & Lahiri estimating equations and jackknife approach | test_han2018 |
