Package: localScore 1.0.11
David Robelin
localScore: Package for Sequence Analysis by Local Score
Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
Authors:
localScore_1.0.11.tar.gz
localScore_1.0.11.tar.gz(r-4.5-noble)localScore_1.0.11.tar.gz(r-4.4-noble)
localScore_1.0.11.tgz(r-4.4-emscripten)localScore_1.0.11.tgz(r-4.3-emscripten)
localScore.pdf |localScore.html✨
localScore/json (API)
# Install 'localScore' in R: |
install.packages('localScore', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- Aeso - Congenital oesophageal atresia data
- HydroScore - Dictionnaire
- LongSeq - Deprecated. Use 'Seq1093' instead.
- MidSeq - Deprecated. Use 'Seq219' instead.
- MySeqList - Deprecated. Use 'SeqListSCOPe' instead.
- SJSyndrome.data - Stevens-Johnson syndrome data
- Seq1093 - Long protein sequence
- Seq219 - Protein sequence
- Seq31 - Short protein sequence
- SeqListSCOPe - Several sequences
- ShortSeq - Deprecated. Use 'Seq31' instead.
- aeso.data - Deprecated. Use 'Aeso' instead.
- dico - Deprecated. Use 'HydroScore' instead.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:b8b2fea6b1. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 03 2024 |
R-4.5-linux-x86_64 | OK | Nov 03 2024 |
Exports:automatic_analysisCharSequence2ScoreSequenceCharSequences2ScoreSequencesdaudinexact_mckarlinkarlinMonteCarlokarlinMonteCarlo_doublelindleyloadMatrixFromFileloadScoreFromFilelocalScoreClocalScoreC_doublemaxPartialSumdmccmonteCarlomonteCarlo_doubleRealScores2IntegerScoresscoreDictionnary2probabilityVectorscoreSequences2probabilityVectorsequences2transmatrixstationary_distributiontransmatrix2sequence
Dependencies:Rcpp