Package: lit 1.0.1

Andrew Bass

lit: Latent Interaction Testing for Genome-Wide Studies

Identifying latent genetic interactions in genome-wide association studies using the Latent Interaction Testing (LIT) framework. LIT is a flexible kernel-based approach that leverages information across multiple traits to detect latent genetic interactions without specifying or observing the interacting variable (e.g., environment). LIT accepts standard PLINK files as inputs to analyze large genome-wide association studies.

Authors:Andrew Bass [aut, cre], Michael Epstein [aut]

lit_1.0.1.tar.gz
lit_1.0.1.tar.gz(r-4.7-arm64)lit_1.0.1.tar.gz(r-4.7-x86_64)lit_1.0.1.tar.gz(r-4.6-arm64)lit_1.0.1.tar.gz(r-4.6-x86_64)
lit_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
lit/json (API)
NEWS

# Install 'lit' in R:
install.packages('lit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ajbass/lit/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

openblascppopenmp

2.85 score 14 scripts 158 downloads 5 exports 31 dependencies

Last updated from:550690a1a3. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK173
linux-devel-x86_64OK171
source / vignettesOK277
linux-release-arm64OK178
linux-release-x86_64OK165
wasm-releaseOK146

Exports:gamut_plinklitlit_plinkmarginalmarginal_plink

Dependencies:bitbit64clicliprCompQuadFormcpp11crayondplyrgenericsgeniogluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6RcppRcppArmadilloRcppEigenreadrrlangtibbletidyselecttzdbutf8vctrsvroomwithr

lit Package Vignette

Andrew J. Bass and Michael P. Epstein

Rendered fromlit.Rmdusingknitr::rmarkdownon May 27 2026.

Last update: 2023-08-15
Started: 2023-08-15