Package: lincom 1.2

Yijian Huang

lincom: Linear Biomarker Combination: Empirical Performance Optimization

Perform two linear combination methods for biomarkers: (1) Empirical performance optimization for specificity (or sensitivity) at a controlled sensitivity (or specificity) level of Huang and Sanda (2022) <doi:10.1214/22-aos2210>, and (2) weighted maximum score estimator with empirical minimization of averaged false positive rate and false negative rate. Both adopt the algorithms of Huang and Sanda (2022) <doi:10.1214/22-aos2210>. 'MOSEK' solver is used and needs to be installed; an academic license for 'MOSEK' is free.

Authors:Yijian Huang <yhuang5@emory.edu>

lincom_1.2.tar.gz
lincom_1.2.tar.gz(r-4.5-noble)lincom_1.2.tar.gz(r-4.4-noble)
lincom_1.2.tgz(r-4.4-emscripten)lincom_1.2.tgz(r-4.3-emscripten)
lincom.pdf |lincom.html
lincom/json (API)

# Install 'lincom' in R:
install.packages('lincom', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

fortran

2.00 score 214 downloads 2 exports 2 dependencies

Last updated 9 months agofrom:61ee036498. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 28 2025
R-4.5-linux-x86_64OKMar 28 2025
R-4.4-linux-x86_64OKMar 28 2025

Exports:eumwmse

Dependencies:RmosekSparseM

Linear Biomarker Combination: Empirical Performance Optimization

Rendered fromlincom.Rmdusingknitr::rmarkdownon Mar 28 2025.

Last update: 2023-06-21
Started: 2023-06-21

Citation

To cite package ‘lincom’ in publications use:

Huang Y (2024). lincom: Linear Biomarker Combination: Empirical Performance Optimization. R package version 1.2, https://CRAN.R-project.org/package=lincom.

ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see ‘help("citation")’.

Corresponding BibTeX entry:

  @Manual{,
    title = {lincom: Linear Biomarker Combination: Empirical
      Performance Optimization},
    author = {Yijian Huang},
    year = {2024},
    note = {R package version 1.2},
    url = {https://CRAN.R-project.org/package=lincom},
  }