Load and validate | Descriptive analysis | Modelling without random-row leakage | Compositional data | Risk components
Package: limpidR 0.1.0
Chanikya Naidu
limpidR: Reproducible Analysis of Freshwater Microplastic Data
Provides validation, harmonization, descriptive analysis, compositional analysis, transparent risk components, grouped cross-validation, visualization, and predictive modelling tools for freshwater microplastic datasets. The package includes synthetic demonstration data conforming to the LIMPID-India data model and emphasizes explicit units, provenance, percentage closure, non-imputation of missing environmental covariates, and leakage-aware model evaluation.
Authors:
limpidR_0.1.0.tar.gz
limpidR_0.1.0.zip(r-4.7-any)limpidR_0.1.0.zip(r-4.6-any)
limpidR_0.1.0.tar.gz(r-4.7-any)limpidR_0.1.0.tar.gz(r-4.6-any)
limpidR_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
limpidR/json (API)
| # Install 'limpidR' in R: |
| install.packages('limpidR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:8d58a71139. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 130 | ||
| source / vignettes | OK | 207 | ||
| linux-release | OK | 124 | ||
| windows-devel | OK | 78 | ||
| windows-release | OK | 67 | ||
| wasm-release | OK | 117 |
Exports:aitchison_distanceanalyse_morphologyanalyse_polymersanalyse_size_distributionbuild_model_datacalculate_riskcheck_databaseclassify_hotspotsclean_mp_dataclr_transformcomposition_closureconvert_mp_unitscross_validate_mplimpid_citationlimpid_session_infolimpid_tablesload_limpidmap_mp_hotspotsmodel_mp_abundanceplot_depth_profileplot_lake_mapplot_morphology_profileplot_polymer_profileplot_seasonalitypredict_mpprovenance_summarysummarise_abundancevalidate_mp_data
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Getting started with limpidR
Last update: 2026-09-30
Started: 2026-09-30
Scientific design and reproducibility
Missingness | Model validation | Hotspots | Depth | Risk
Last update: 2026-09-30
Started: 2026-09-30
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Reproducible Analysis of Freshwater Microplastic Data | limpidR-package limpidR |
| Transparent risk components and reproducibility metadata | calculate_risk limpid_citation limpid_session_info |
| Load, clean and validate freshwater microplastic data | check_database clean_mp_data convert_mp_units limpid_tables load_limpid print.limpid_db print.limpid_validation validate_mp_data |
| Model and validate freshwater microplastic abundance | cross_validate_mp model_mp_abundance predict.limpid_model predict_mp print.limpid_model |
| Visualize freshwater microplastic patterns | classify_hotspots map_mp_hotspots plot_depth_profile plot_lake_map plot_morphology_profile plot_polymer_profile plot_seasonality |
| Descriptive and compositional microplastic analysis | aitchison_distance analyse_morphology analyse_polymers analyse_size_distribution build_model_data clr_transform composition_closure provenance_summary summarise_abundance |