Package: lab2clean 1.0.0
Ahmed Zayed
lab2clean: Automation and Standardization of Cleaning Clinical Lab Data
Navigating the shift of clinical laboratory data from primary everyday clinical use to secondary research purposes presents a significant challenge. Given the substantial time and expertise required for lab data pre-processing and cleaning and the lack of all-in-one tools tailored for this need, we developed our algorithm 'lab2clean' as an open-source R-package. 'lab2clean' package is set to automate and standardize the intricate process of cleaning clinical laboratory results. With a keen focus on improving the data quality of laboratory result values, our goal is to equip researchers with a straightforward, plug-and-play tool, making it smoother for them to unlock the true potential of clinical laboratory data in clinical research and clinical machine learning (ML) model development. Version 1.0 of the algorithm is described in detail in 'Zayed et al. (2024)' <doi:10.1186/s12911-024-02652-7>.
Authors:
lab2clean_1.0.0.tar.gz
lab2clean_1.0.0.tar.gz(r-4.5-noble)lab2clean_1.0.0.tar.gz(r-4.4-noble)
lab2clean_1.0.0.tgz(r-4.4-emscripten)lab2clean_1.0.0.tgz(r-4.3-emscripten)
lab2clean.pdf |lab2clean.html✨
lab2clean/json (API)
| # Install 'lab2clean' in R: |
| install.packages('lab2clean', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- Function_1_dummy - Dummy Data for demonstrating function 1
- Function_2_dummy - Dummy Data for demonstrating function 2
- common_words - Data for the common words
- logic_rules - Data for the logic rules
- reportable_interval - Data for the reportable interval
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 months agofrom:10d90225d6. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 09 2024 |
| R-4.5-linux | OK | Dec 09 2024 |
Exports:clean_lab_resultvalidate_lab_result
Dependencies:data.table
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Clean and Standardize Laboratory Result Values | clean_lab_result |
| Data for the common words | common_words |
| Dummy Data for demonstrating function 1 | Function_1_dummy |
| Dummy Data for demonstrating function 2 | Function_2_dummy |
| Data for the logic rules | logic_rules |
| Data for the reportable interval | reportable_interval |
| Validate Quantitative Laboratory Result Values | validate_lab_result |