| Access or assign dispersal sigmas of 'KinPairSimulation' objects | access_sigmas breedsigma breedsigma,KinPairSimulation-method breedsigma<- gravsigma gravsigma,KinPairSimulation-method gravsigma<- initsigma initsigma,KinPairSimulation-method initsigma<- ovisigma ovisigma,KinPairSimulation-method ovisigma<- posigma posigma,KinPairSimulation-method posigma<- |
| Estimate the axial dispersal distance of a kernel | axials |
| Add axial distributions | axials_add |
| Combine axial distributions to produce a mixed distribution | axials_combine |
| Decompose an axial distribution into simple components | axials_decompose |
| Calculate the intergenerational (PO) dispersal kernel from the distributions of close kin | axials_standard |
| Subtract axial distributions | axials_subtract |
| Estimate the axial dispersal distance of a kernel with confidence intervals | axpermute |
| Calculate the intergenerational (PO) dispersal kernel from the distributions of close kin (bootstrapped) | axpermute_standard |
| Subtract axial distributions with confidence intervals | axpermute_subtract |
| Access breeding cycle at sampling of 'DispersalModel' object. | breeding_cycle breeding_cycle,DispersalModel-method breeding_cycle,KinPairData-method |
| Access life stage at which breeding occurs of 'DispersalModel' object | breeding_stage breeding_stage,DispersalModel-method |
| Check valid kinship | check_valid_kinship |
| Check valid lifestage | check_valid_lifestage |
| Reads '.csv' and converts to 'KinPairData' object | csv_to_kinpair |
| Convert dataframe or tibble to 'KinPairData' class | df_to_kinpair |
| Create Dispersal Model of an Organism | dispersal_model |
| Access dispersal vector of 'DispersalModel' object. | dispersal_vector dispersal_vector,DispersalModel-method |
| DispersalModel Class | DispersalModel DispersalModel-class initialize,DispersalModel-method show,DispersalModel-method |
| Show printout of named items stored in appdata. | display_appdata |
| Access or assign 'distances' category of 'KinPairData' class objects | distances distances,KinPairData-method |
| Change the shape (aspect ratio) of a rectangle while preserving area | elongate |
| Access or modify the 'filter' parameters of 'KinPairSimulation' objects | filter_methods lower lower,KinPairSimulation-method lower<- lower<-,KinPairSimulation-method sampledims sampledims,KinPairSimulation-method sampledims<- sampledims<-,KinPairSimulation-method samplenum samplenum,KinPairSimulation-method samplenum<- samplenum<-,KinPairSimulation-method spacing spacing,KinPairSimulation-method spacing<- spacing<-,KinPairSimulation-method upper upper,KinPairSimulation-method upper<- upper<-,KinPairSimulation-method |
| Access filtertype of 'KinPairSimulation' object | filtertype filtertype,KinPairSimulation-method filtertype<- |
| Access FS phase split point of 'DispersalModel' object. | fs fs,DispersalModel-method |
| Access dispersal model of 'KinPairSimulation' object | get_dispersal_model get_dispersal_model,KinPairSimulation-method |
| Access HS phase split point of 'DispersalModel' object. | hs hs,DispersalModel-method |
| Check if object is of class 'DispersalModel' | is.DispersalModel |
| Check if object is of class KinPairData | is.KinPairData |
| Check if object is of class KinPairSimulation | is.KinPairSimulation |
| Access kernel type of 'KinPairSimulation' object | kernelshape kernelshape,KinPairSimulation-method |
| Access or assign kerneltype of 'KinPairSimulation' object | kerneltype kerneltype,KinPairSimulation-method kerneltype<- |
| Make new KinPairData object | kin_pair_data |
| KinPairSimulation | kin_pair_simulation |
| Write 'KinPairData' object to '.csv' format | kinpair_to_csv |
| Extract KinPairData class object to tibble | kinpair_to_tibble |
| Write 'KinPairData' object to '.tsv' format | kinpair_to_tsv |
| Formal class KinPairData | initialize,KinPairData-method KinPairData KinPairData-class show,KinPairData-method |
| Constructor for KinPairSimulation Class (composite) | KinPairSimulation_composite |
| Constructor for KinPairSimulation Class (custom) | KinPairSimulation_custom |
| Constructor for KinPairSimulation Class (simple) | KinPairSimulation_simple |
| KinPairSimulation Class | initialize,KinPairSimulation-method KinPairSimulation KinPairSimulation-class show,KinPairSimulation-method |
| Access or assign 'kinship' category of 'KinPairData' class objects | kinship kinship,KinPairData-method kinship<- kinship<-,KinPairData-method |
| Access or assign 'lifestage' category of 'KinPairData' class objects | lifestage lifestage,KinPairData-method lifestage<- lifestage<-,KinPairData-method |
| Position & kinship information of _Aedes aegypti_ from Mentari Court, Malaysia | mentari |
| Mount 'KinPairData' Objects for use in kindisperse app | mount_appdata |
| Reads '.kindata' filetype back to 'KinPairData' or 'KinPairSimulation' object. | read_kindata |
| Change the dimensions of a KinPairSimulation Object and shift kinpairs so at least one individual is within the area | rebase_dims |
| Reset kindisperse appdata | reset_appdata |
| Reset app tempdata (internal mem) | reset_tempdata |
| Retrieve 'KinPairData' object from appdata (single) | retrieve_appdata |
| Retrieve all tempdata (internal mem) from app (as list) | retrieve_tempdata |
| Retrieve all 'KinPairData' objects from appdata (as list) | retrieveall_appdata |
| Run kindisperse app | run_kindisperse |
| Subsample and filter a 'KinPairSimulation' or 'KinPairData' Object | sample_kindist |
| Access sampling stage of 'DispersalModel' or 'KinPairSimulation' object. | sampling_stage sampling_stage,DispersalModel-method sampling_stage,KinPairData-method sampling_stage<- sampling_stage<-,DispersalModel-method |
| Access simulation dimensions of 'KinPairSimulation' object | simdims simdims,KinPairSimulation-method simdims<- |
| Simple kin dispersal simulation for graphical display. (returns the data side as a tibble). | simgraph_data |
| Simple kin dispersal simulation for graphical display. (graphs the pre-existing simulation). | simgraph_graph |
| Access or assign simulation type of 'KinPairSimulation' object | simtype simtype,KinPairSimulation-method simtype<- |
| Simulate kin dispersal distance pairs with composite sigmas | simulate_kindist_composite |
| Simulate kin dispersal distance pairs with custom species dispersal models. | simulate_kindist_custom |
| Simulate kin dispersal distance pairs with simple sigma | simulate_kindist_simple |
| Access breeding cycle stages of 'DispersalModel' object. | stages stages,DispersalModel-method |
| Reads '.tsv' and converts to 'KinPairData' object | tsv_to_kinpair |
| Unmount a 'KinPairData' Object (clear slot from appdata environment) | unmount_appdata |
| Convert vector of kin separation distances to 'KinPairData' class | vector_to_kinpair |
| Access life stage at which individual is first visible to sampling (i.e. from which breeding cycles are calculated) | visible_stage visible_stage,DispersalModel-method |
| Write 'KinPairData' or 'KinPairSimulation' object in '.kindata' format | write_kindata |