Package: jetset 3.4.0
Aron Eklund
jetset: One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays
On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.
Authors:
jetset_3.4.0.tar.gz
jetset_3.4.0.tar.gz(r-4.5-noble)jetset_3.4.0.tar.gz(r-4.4-noble)
jetset_3.4.0.tgz(r-4.4-emscripten)jetset_3.4.0.tgz(r-4.3-emscripten)
jetset.pdf |jetset.html✨
jetset/json (API)
NEWS
| # Install 'jetset' in R: |
| install.packages('jetset', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- scores.hgu133a - Data: Probe set quality scores
- scores.hgu133plus2 - Data: Probe set quality scores
- scores.hgu95av2 - Data: Probe set quality scores
- scores.u133x3p - Data: Probe set quality scores
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:518b0429b7. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 27 2024 |
| R-4.5-linux | OK | Nov 27 2024 |
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslorg.Hs.eg.dbpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieve jetset mapped probe sets | jmap |
| Retrieve jetset scores for probe sets | jscores |
| Data: Probe set quality scores | scores.hgu133a scores.hgu133plus2 scores.hgu95av2 scores.u133x3p |