Package: island 0.2.10

Vicente Jimenez

island: Stochastic Island Biogeography Theory Made Easy

Develops stochastic models based on the Theory of Island Biogeography (TIB) of MacArthur and Wilson (1967) <doi:10.1023/A:1016393430551> and extensions. It implements methods to estimate colonization and extinction rates (including environmental variables) given presence-absence data, simulates community assembly, and performs model selection.

Authors:Vicente Jimenez [aut, cre], David Alonso [aut]

island_0.2.10.tar.gz
island_0.2.10.tar.gz(r-4.5-noble)island_0.2.10.tar.gz(r-4.4-noble)
island_0.2.10.tgz(r-4.4-emscripten)island_0.2.10.tgz(r-4.3-emscripten)
island.pdf |island.html
island/json (API)
NEWS

# Install 'island' in R:
install.packages('island', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • gsl– GNU Scientific Library (GSL)
Datasets:
  • alonso15 - Lakshadweep Archipelago coral fish community reassembly
  • idaho - Mapped plant community time series, Dubois, ID
  • lakshadweep - Lakshadweep Archipelago coral fish community reassembly data
  • lakshadweepPLUS - Lakshadweep Archipelago coral fish community reassembly data in a single data frame
  • simberloff - Simberloff and Wilson original defaunation experiment data

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.08 score 40 scripts 403 downloads 24 exports 0 dependencies

Last updated 1 years agofrom:0aaf50103d. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-linux-x86_64OKOct 31 2024

Exports:akaikeicakaikeiccall_environmental_fitcetotranscustom_environmental_fitdata_generationgreedy_environmental_fitibd_modelsirregular_multiple_datasetsirregular_single_datasetmss_cedpNLL_envNLL_imdNLL_isdNLL_rssnull_modelPA_simulationr_squaredrates_calculatorregular_sampling_schemesimulated_modelsss_cedpupgma_model_selectionweight_of_evidence

Dependencies:

Colonization and extinction rates for IBD models

Rendered fromIBDmodels.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2023-11-30
Started: 2018-05-09

Estimating imperfect detectability

Rendered fromdetectability.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2022-10-05
Started: 2018-05-09

island: the Theory of Island Biogeography made easy

Rendered fromisland.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2019-01-21
Started: 2018-05-09