Package: interep 0.4.1

Fei Zhou

interep: Interaction Analysis of Repeated Measure Data

Extensive penalized variable selection methods have been developed in the past two decades for analyzing high dimensional omics data, such as gene expressions, single nucleotide polymorphisms (SNPs), copy number variations (CNVs) and others. However, lipidomics data have been rarely investigated by using high dimensional variable selection methods. This package incorporates our recently developed penalization procedures to conduct interaction analysis for high dimensional lipidomics data with repeated measurements. The core module of this package is developed in C++. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.

Authors:Fei Zhou, Jie Ren, Yuwen Liu, Xiaoxi Li, Cen Wu, Yu Jiang

interep_0.4.1.tar.gz
interep_0.4.1.tar.gz(r-4.7-arm64)interep_0.4.1.tar.gz(r-4.7-x86_64)interep_0.4.1.tar.gz(r-4.6-arm64)interep_0.4.1.tar.gz(r-4.6-x86_64)
interep_0.4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
interep/json (API)
NEWS

# Install 'interep' in R:
install.packages('interep', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/feizhoustat/interep/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • dat - Simulated data for demonstrating the features of interep

On CRAN:

Conda:

openblascppopenmp

1.70 score 6 scripts 330 downloads 1 mentions 5 exports 3 dependencies

Last updated from:d17d77bfb3. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK120
linux-devel-x86_64OK109
source / vignettesOK217
linux-release-arm64OK122
linux-release-x86_64OK153
wasm-releaseOK104

Exports:cv.interepdmcpintereppenaltyreformat

Dependencies:MASSRcppRcppArmadillo