Package: inferCSN 1.0.8
Meng Xu
inferCSN: Inferring Cell-Specific Gene Regulatory Network
An R package for inferring cell-type specific gene regulatory network from single-cell RNA data.
Authors:
inferCSN_1.0.8.tar.gz
inferCSN_1.0.8.tar.gz(r-4.5-noble)inferCSN_1.0.8.tar.gz(r-4.4-noble)
inferCSN_1.0.8.tgz(r-4.4-emscripten)inferCSN_1.0.8.tgz(r-4.3-emscripten)
inferCSN.pdf |inferCSN.html✨
inferCSN/json (API)
# Install 'inferCSN' in R: |
install.packages('inferCSN', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mengxu98/infercsn/issues
Pkgdown:https://mengxu98.github.io
- example_ground_truth - Example ground truth data
- example_matrix - Example matrix data
- example_meta_data - Example meta data
Last updated 3 months agofrom:c1e2de455d. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 23 2024 |
R-4.5-linux-x86_64 | OK | Nov 23 2024 |
Exports:as_matrixcalculate_acccalculate_auccalculate_gene_rankcheck_sparsityfilter_sort_matrixfit_sparse_regressioninferCSNlog_messagenetwork_formatnetwork_siftnormalizationparallelize_funplot_contrast_networksplot_dynamic_networksplot_embeddingplot_network_heatmapplot_scatterplot_static_networksplot_weight_distributionsingle_networksparse_regressiontable_to_matrix
Dependencies:cachemclicodacodetoolscolorspacecpp11doParalleldplyrfansifarverfastmapforeachgenericsggforceggnetworkggplot2ggraphggrepelgluegraphlayoutsgridExtragtableigraphisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnetworknlmepatchworkpbapplypillarpkgconfigpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenRcppParallelrlangscalessnastatnet.commonstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr