Package: ijtiff 2.3.4

Rory Nolan

ijtiff: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files

General purpose TIFF file I/O for R users. Currently the only such package with read and write support for TIFF files with floating point (real-numbered) pixels, and the only package that can correctly import TIFF files that were saved from 'ImageJ' and write TIFF files than can be correctly read by 'ImageJ' <https://imagej.net/ij/>. Also supports text image I/O.

Authors:Rory Nolan [aut, cre], Kent Johnson [aut], Simon Urbanek [ctb], Sergi Padilla-Parra [ths], Jeroen Ooms [rev, ctb], Jon Clayden [rev]

ijtiff_2.3.4.tar.gz
ijtiff_2.3.4.tar.gz(r-4.5-noble)ijtiff_2.3.4.tar.gz(r-4.4-noble)
ijtiff_2.3.4.tgz(r-4.4-emscripten)ijtiff_2.3.4.tgz(r-4.3-emscripten)
ijtiff.pdf |ijtiff.html
ijtiff/json (API)
NEWS

# Install 'ijtiff' in R:
install.packages('ijtiff', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/ijtiff/issues

Pkgdown:https://docs.ropensci.org

Uses libs:
  • tiff– Tag Image File Format (TIFF) library

tiff

5.09 score 7 packages 35 scripts 1.1k downloads 1 mentions 19 exports 35 dependencies

Last updated 12 months agofrom:16606f6ff8. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 25 2024
R-4.5-linux-x86_64OKNov 25 2024

Exports:as_EBImageas_ijtiff_imgcount_framesdisplayframes_countijtiff_imglinescan_to_stackread_tagsread_tifread_txt_imgstack_to_linescantags_readtif_readtif_tags_referencetif_writetxt_img_readtxt_img_writewrite_tifwrite_txt_img

Dependencies:backportsbitbit64checkmateclicliprcpp11crayondplyrfansifsgenericsgluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogresspurrrR6readrrlangstrexstringistringrtibbletidyselecttzdbutf8vctrsvroomwithrzeallot

Reading and Writing Images

Rendered fromreading-and-writing-images.Rmdusingknitr::rmarkdownon Nov 25 2024.

Last update: 2020-08-05
Started: 2018-09-10

Text Images

Rendered fromtext-images.Rmdusingknitr::rmarkdownon Nov 25 2024.

Last update: 2018-09-10
Started: 2018-09-10

The ImageJ Problem

Rendered fromthe-imagej-problem.Rmdusingknitr::rmarkdownon Nov 25 2024.

Last update: 2023-12-14
Started: 2018-09-10

Readme and manuals

Help Manual

Help pageTopics
Convert an ijtiff_img to an EBImage::Image.as_EBImage
Count the number of frames in a TIFF file.count_frames frames_count
Basic image display.display
'ijtiff': TIFF I/O for _ImageJ_ usersijtiff-package ijtiff
'ijtiff_img' class.as_ijtiff_img ijtiff_img
Rejig linescan images.linescan-conversion linescan_to_stack stack_to_linescan
Print method for an 'ijtiff_img'.print.ijtiff_img
Read TIFF tag information without actually reading the image array.read_tags tags_read
Read an image stored in the TIFF formatread_tif tif_read
Read/write an image array to/from disk as text file(s).read_txt_img text-image-io txt_img_read txt_img_write write_txt_img
TIFF tag reference.tif_tags_reference
Write images in TIFF formattif_write write_tif