Package: icardaFIGSr 1.0.2
Zakaria Kehel
icardaFIGSr: Subsetting using Focused Identification of the Germplasm Strategy (FIGS)
Running Focused Identification of the Germplasm Strategy (FIGS) to make best subsets from Genebank Collection.
Authors:
icardaFIGSr_1.0.2.tar.gz
icardaFIGSr_1.0.2.tar.gz(r-4.5-noble)icardaFIGSr_1.0.2.tar.gz(r-4.4-noble)
icardaFIGSr_1.0.2.tgz(r-4.4-emscripten)icardaFIGSr_1.0.2.tgz(r-4.3-emscripten)
icardaFIGSr.pdf |icardaFIGSr.html✨
icardaFIGSr/json (API)
| # Install 'icardaFIGSr' in R: |
| install.packages('icardaFIGSr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- FIGS - FIGS subset for wheat sodicity resistance
- durumDaily - DurumDaily
- durumWC - DurumWC
- septoriaDurumWC - SeptoriaDurumWC
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:0e0dac2b38. Checks:OK: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 23 2024 |
| R-4.5-linux | NOTE | Aug 23 2024 |
Exports:extractWCdatagetAccessionsgetCropsgetDailygetGrowthPeriodgetMetricsgetMetricsPCAgetOnsetgetTraitsgetTraitsDatamapAccessionsmodelingSummarysplitDatatuneTrainvarimpPred
Dependencies:askpassbase64encbslibcachemcaretclasscliclockcodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tablediagramdigestdoParalleldplyre1071evaluatefansifarverfastmapfontawesomeforeachfsfuturefuture.applygenericsggplot2globalsgluegowergridSVGgtablehardhathighrhtmltoolshtmlwidgetshttpuvhttripredisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelavalazyevalleafletleaflet.providerslifecyclelistenvlubridatemagrittrMASSMatrixmemoisemgcvmimeModelMetricsmunsellnlmennetnumDerivopensslparallellypillarpkgconfigplotROCplyrpngpROCprodlimprogressrpromisesproxypurrrR6rappdirsrasterRColorBrewerRcpprecipesreshape2rlangrmarkdownrpartsassscalesshapeshinysourcetoolsspSQUAREMstringistringrsurvivalsysterratibbletidyrtidyselecttimechangetimeDatetinytextzdbutf8vctrsviridisLitewithrxfunXMLxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| durumDaily | durumDaily |
| durumWC | durumWC |
| Extracting World Climatic Data | extractWCdata |
| FIGS subset for wheat sodicity resistance | FIGS |
| Getting Accession Data from ICARDA's Genebank Documentation System | getAccessions |
| Crops Available in ICARDA's Genebank | getCrops |
| Extracting Daily Climatic Variables | getDaily |
| Calculating Growing Degree Days and Lengths of Growth Stages for Various Crops Using Onset Data from ICARDA's Database | getGrowthPeriod |
| Performance Measures | getMetrics |
| Performance Measures with PCA pre-processing | getMetricsPCA |
| Extracting Daily Climatic Variables Based on Onset of Planting | getOnset |
| Getting Traits Associated with Crops from the ICARDA's Genebank Documentation System | getTraits |
| Getting Trait Values of Accessions for a Specific Trait | getTraitsData |
| Plotting Accessions on Map. | mapAccessions |
| Get modeling metrics | modelingSummary |
| septoriaDurumWC | septoriaDurumWC |
| Splitting Data | splitData |
| Tuning and Training the Data | tuneTrain |
| Variable Importance and Predictions | varimpPred |