Package: icardaFIGSr 1.0.2
Zakaria Kehel
icardaFIGSr: Subsetting using Focused Identification of the Germplasm Strategy (FIGS)
Running Focused Identification of the Germplasm Strategy (FIGS) to make best subsets from Genebank Collection.
Authors:
icardaFIGSr_1.0.2.tar.gz
icardaFIGSr_1.0.2.tar.gz(r-4.7-any)icardaFIGSr_1.0.2.tar.gz(r-4.6-any)
icardaFIGSr_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
icardaFIGSr/json (API)
| # Install 'icardaFIGSr' in R: |
| install.packages('icardaFIGSr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- durumDaily - DurumDaily
- durumWC - DurumWC
- FIGS - FIGS subset for wheat sodicity resistance
- septoriaDurumWC - SeptoriaDurumWC
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:0e0dac2b38. Checks:2 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 300 | ||
| source / vignettes | OK | 246 | ||
| linux-release-x86_64 | NOTE | 295 | ||
| wasm-release | OK | 179 |
Exports:extractWCdatagetAccessionsgetCropsgetDailygetGrowthPeriodgetMetricsgetMetricsPCAgetOnsetgetTraitsgetTraitsDatamapAccessionsmodelingSummarysplitDatatuneTrainvarimpPred
Dependencies:askpassbase64encbslibcachemcaretclassclassIntcliclockcodetoolscommonmarkcpp11crosstalkcurldata.tableDBIdiagramdigestdoParalleldplyre1071evaluatefarverfastmapfontawesomeforeachfsfuturefuture.applygenericsggplot2globalsgluegowergridSVGgtablehardhathighrhtmltoolshtmlwidgetshttpuvhttripredisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelavalazyevalleafletleaflet.providerslifecyclelistenvlubridatemagrittrMASSMatrixmemoisemimeModelMetricsnlmennetnumDerivopensslotelparallellypillarpkgconfigplotROCplyrpngpROCprodlimprogressrpromisesproxypurrrR6rappdirsrasterRColorBrewerRcpprecipesreshape2rlangrmarkdownrparts2S7sassscalessfshapeshinysourcetoolsspsparsevctrsSQUAREMstringistringrsurvivalsysterratibbletidyrtidyselecttimechangetimeDatetinytextzdbunitsutf8vctrsviridisLitewithrwkxfunXMLxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| durumDaily | durumDaily |
| durumWC | durumWC |
| Extracting World Climatic Data | extractWCdata |
| FIGS subset for wheat sodicity resistance | FIGS |
| Getting Accession Data from ICARDA's Genebank Documentation System | getAccessions |
| Crops Available in ICARDA's Genebank | getCrops |
| Extracting Daily Climatic Variables | getDaily |
| Calculating Growing Degree Days and Lengths of Growth Stages for Various Crops Using Onset Data from ICARDA's Database | getGrowthPeriod |
| Performance Measures | getMetrics |
| Performance Measures with PCA pre-processing | getMetricsPCA |
| Extracting Daily Climatic Variables Based on Onset of Planting | getOnset |
| Getting Traits Associated with Crops from the ICARDA's Genebank Documentation System | getTraits |
| Getting Trait Values of Accessions for a Specific Trait | getTraitsData |
| Plotting Accessions on Map. | mapAccessions |
| Get modeling metrics | modelingSummary |
| septoriaDurumWC | septoriaDurumWC |
| Splitting Data | splitData |
| Tuning and Training the Data | tuneTrain |
| Variable Importance and Predictions | varimpPred |