Package: htrSPRanalysis 0.1.0

Janice McCarthy Developer

htrSPRanalysis: Analysis of Surface Plasmon Resonance Data

Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.

Authors:Janice McCarthy Developer [aut, cre, cph], Kan Li Dev [aut], S. Moses Dennison [aut], Georgia D. Tomaras [aut]

htrSPRanalysis_0.1.0.tar.gz
htrSPRanalysis_0.1.0.tar.gz(r-4.5-noble)htrSPRanalysis_0.1.0.tar.gz(r-4.4-noble)
htrSPRanalysis_0.1.0.tgz(r-4.4-emscripten)htrSPRanalysis_0.1.0.tgz(r-4.3-emscripten)
htrSPRanalysis.pdf |htrSPRanalysis.html✨
htrSPRanalysis/json (API)

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

8 exports 0.09 score 56 dependencies 2 scripts

Last updated 22 days agofrom:c5fc644a07. Checks:OK: 2. Indexed: yes.

Exports:%>%create_csvcreate_pdfget_fitsget_fitted_plotsget_plots_before_baselineget_rc_plotsprocess_input

Dependencies:bitbit64cellrangerclicliprcolorspacecpp11crayondplyrfansifarverforcatsgenericsggplot2gluegridExtragtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmeopenxlsxpillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerRcppreadrreadxlrematchrlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrzipzoo