Models | Definitions | Baseline covariates | Model matrices | Post-processing | Hierarchical model | Independent model | Pooled model | Borrowing metrics | Effective sample size (ESS) | Precision ratio (hierarchical model only) | Variance shift ratio | Mean shift ratio (legacy) | References
This package is hidden from search results because it is not hosted in the universe of the upstream owner
cran. To fix this you can add URL: https://cran.r-universe.dev/historicalborrowlong to the package DESCRIPTION file. See also theR-universe documentation.Package: historicalborrowlong 0.1.1
William Michael Landau
historicalborrowlong: Longitudinal Bayesian Historical Borrowing Models
Historical borrowing in clinical trials can improve precision and operating characteristics. This package supports a longitudinal hierarchical model to borrow historical control data from other studies to better characterize the control response of the current study. It also quantifies the amount of borrowing through longitudinal benchmark models (independent and pooled). The hierarchical model approach to historical borrowing is discussed by Viele et al. (2013) <doi:10.1002/pst.1589>.
Authors:
historicalborrowlong_0.1.1.tar.gz
historicalborrowlong_0.1.1.zip(r-4.7-x86_64)historicalborrowlong_0.1.1.zip(r-4.7-arm64)historicalborrowlong_0.1.1.zip(r-4.6-x86_64)historicalborrowlong_0.1.1.zip(r-4.6-arm64)
historicalborrowlong_0.1.1.tar.gz(r-4.7-arm64)historicalborrowlong_0.1.1.tar.gz(r-4.7-x86_64)historicalborrowlong_0.1.1.tar.gz(r-4.6-arm64)historicalborrowlong_0.1.1.tar.gz(r-4.6-x86_64)
historicalborrowlong_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
historicalborrowlong/json (API)
| # Install 'historicalborrowlong' in R: |
| install.packages('historicalborrowlong', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wlandau/historicalborrowlong/issues
Pkgdown/docs site:https://wlandau.github.io
Last updated from:9085dfc562. Checks:10 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 277 | ||
| linux-devel-x86_64 | OK | 305 | ||
| source / vignettes | OK | 434 | ||
| linux-release-arm64 | OK | 284 | ||
| linux-release-x86_64 | OK | 338 | ||
| windows-devel-arm64 | OK | 390 | ||
| windows-devel-x86_64 | OK | 342 | ||
| windows-release-arm64 | OK | 377 | ||
| windows-release-x86_64 | OK | 361 | ||
| wasm-release | OK | 186 |
Exports:hbl_convergencehbl_datahbl_esshbl_mcmc_hierarchicalhbl_mcmc_independenthbl_mcmc_poolhbl_mcmc_sgehbl_metricshbl_plot_borrowhbl_plot_grouphbl_plot_tauhbl_s_tauhbl_sim_hierarchicalhbl_sim_independenthbl_sim_poolhbl_summary
Dependencies:abindarrayhelpersbackportsBHbinomcallrcheckmatecliclustermqcodacodetoolscpp11crayondescdistributionaldplyrfarvergenericsggdistggplot2globalsgluegridExtragtablegtoolshmsinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsnumDerivotelpillarpkgbuildpkgconfigposteriorprettyunitsprocessxprogresspspurrrquadprogQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeadersstringistringrsvUnittensorAtibbletidybayestidyrtidyselecttrialrutf8vctrsviridisLitewithrzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| historicalborrowlong: Bayesian longitudinal historical borrowing models for clinical studies. | historicalborrowlong-package |
| Check convergence diagnostics | hbl_convergence |
| Standardize data | hbl_data |
| Effective sample size (ESS) | hbl_ess |
| Longitudinal hierarchical MCMC | hbl_mcmc_hierarchical |
| Longitudinal independent MCMC | hbl_mcmc_independent |
| Longitudinal pooled MCMC | hbl_mcmc_pool |
| Run all MCMCs on a Sun Grid Engine (SGE) cluster. | hbl_mcmc_sge |
| Plot the hierarchical model response against the benchmark models. | hbl_plot_borrow |
| Plot the groups of the hierarchical model and its benchmark models. | hbl_plot_group |
| Plot tau | hbl_plot_tau |
| Non-longitudinal hierarchical simulations. | hbl_sim_hierarchical |
| Longitudinal independent simulations. | hbl_sim_independent |
| Longitudinal pooled simulations. | hbl_sim_pool |
| Model summary | hbl_summary |