Package: hdf5r.Extra 0.1.0
hdf5r.Extra: Extensions for 'HDF5' R Interfaces
Some methods to manipulate 'HDF5' files, extending the 'hdf5r' package. Reading and writing R objects to 'HDF5' formats follow the specification of 'AnnData' <https://anndata.readthedocs.io/en/latest/fileformat-prose.html>.
Authors:
hdf5r.Extra_0.1.0.tar.gz
hdf5r.Extra_0.1.0.tar.gz(r-4.5-noble)hdf5r.Extra_0.1.0.tar.gz(r-4.4-noble)
hdf5r.Extra_0.1.0.tgz(r-4.4-emscripten)hdf5r.Extra_0.1.0.tgz(r-4.3-emscripten)
hdf5r.Extra.pdf |hdf5r.Extra.html✨
hdf5r.Extra/json (API)
NEWS
# Install 'hdf5r.Extra' in R: |
install.packages('hdf5r.Extra', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ycli1995/hdf5r.extra/issues
Last updated 5 days agofrom:2a9afe4f88. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 19 2024 |
R-4.5-linux | OK | Oct 19 2024 |
Exports:h5AbsLinkNameh5Attrh5Attributesh5AttrNamesh5Backuph5Classh5Copyh5CreateDataseth5CreateFileh5CreateGrouph5Deleteh5DeleteAttrh5Dimsh5Existsh5GuessDtypeh5Listh5MaxDimsh5Moveh5Openh5Overwriteh5Preph5Readh5ReadDataseth5TryOpenh5Writeh5WriteAttrh5WriteDataseth5WriteScalaris.H5Dis.H5Group
Dependencies:backportsbitbit64checkmateclicolorspacedplyreasy.utilsfansifarverfastmatchgenericsgluehdf5rlabelinglatticelifecyclemagrittrMatrixmunsellpillarpkgconfigPolychromeR6RColorBrewerrlangscalesscatterplot3dtibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Manipulate HDF5 attributes | H5-attributs h5Attr h5Attr.character h5Attr.H5D h5Attr.H5File h5Attr.H5Group h5Attributes h5Attributes.character h5Attributes.H5D h5Attributes.H5File h5Attributes.H5Group h5AttrNames h5AttrNames.character h5AttrNames.H5D h5AttrNames.H5File h5AttrNames.H5Group h5DeleteAttr h5DeleteAttr.character h5DeleteAttr.H5D h5DeleteAttr.H5File h5DeleteAttr.H5Group h5WriteAttr h5WriteAttr.character h5WriteAttr.H5D h5WriteAttr.H5File h5WriteAttr.H5Group |
Get information of an HDF5 dataset | H5-dataset-info h5Dims h5Dims.character h5Dims.H5D h5Dims.H5File h5Dims.H5Group h5MaxDims h5MaxDims.character h5MaxDims.H5D h5MaxDims.H5File h5MaxDims.H5Group |
Format an absolute path name for HDF5 link | h5AbsLinkName |
Back up contents from one HDF5 file to another | h5Backup |
Get the class of an HDF5 link | h5Class is.H5D is.H5Group |
Copy an HDF5 link | h5Copy |
Create a new empty HDF5 dataset | h5CreateDataset h5CreateDataset.character h5CreateDataset.H5File h5CreateDataset.H5Group |
Create a new HDF5 file | h5CreateFile h5CreateFile.character |
Create new HDF5 group | h5CreateGroup h5CreateGroup.character h5CreateGroup.H5File h5CreateGroup.H5Group |
Delete an HDF5 link | h5Delete h5Delete.character h5Delete.H5File h5Delete.H5Group |
Check existence of an HDF5 link | h5Exists h5Exists.character h5Exists.H5File h5Exists.H5Group |
Guess an HDF5 Datatype | h5GuessDtype |
List the contents of an HDF5 group | h5List h5List.character h5List.H5File h5List.H5Group |
Move link in an HDF5 file | h5Move |
Open an HDF5 file, file-handler or group object | h5Open h5Open.character h5Open.H5File h5Open.H5Group |
Overwrite an existing HDF5 link | h5Overwrite |
Prepare an R object to be written into HDF5 file | h5Prep h5Prep.default |
Read data from an existing HDF5 link | h5Read h5Read.character h5Read.H5File h5Read.H5Group |
Read data from an existing H5 dataset | h5ReadDataset h5ReadDataset.character h5ReadDataset.H5D h5ReadDataset.H5File h5ReadDataset.H5Group |
Automatically retry opening HDF5 file | h5TryOpen |
Write an R object to HDF5 file | h5Write h5Write.array h5Write.data.frame h5Write.default h5Write.dgCMatrix h5Write.dgRMatrix h5Write.factor h5Write.list |
Write array-like data into an existing H5 dataset | h5WriteDataset h5WriteDataset.character h5WriteDataset.H5D h5WriteDataset.H5File h5WriteDataset.H5Group |
Write a scalar into HDF5 file | h5WriteScalar h5WriteScalar.character h5WriteScalar.H5File h5WriteScalar.H5Group |