Package: hapsim 0.31
Apostolos Dimitromanolakis
hapsim: Haplotype Data Simulation
Package for haplotype-based genotype simulations. Haplotypes are generated such that their allele frequencies and linkage disequilibrium coefficients match those estimated from an input data set.
Authors:
hapsim_0.31.tar.gz
hapsim_0.31.tar.gz(r-4.5-noble)hapsim_0.31.tar.gz(r-4.4-noble)
hapsim_0.31.tgz(r-4.4-emscripten)hapsim_0.31.tgz(r-4.3-emscripten)
hapsim.pdf |hapsim.html✨
hapsim/json (API)
# Install 'hapsim' in R: |
install.packages('hapsim', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- ACEdata - ACE data set
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:a4fd4ef5e7. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 09 2024 |
R-4.5-linux-x86_64 | OK | Dec 09 2024 |
Exports:.onload.onUnloadallelefreqscheckpdcor2dprimecortocovcovtocordivlocushaplodatahaplofreqshaplosimldplotmakepdmergematsmsesumsqscale
Dependencies:MASS
Readme and manuals
Help Manual
Help page | Topics |
---|---|
ACE data set | ACEdata |
Estimates allele frequencies | allelefreqs |
Diversity score | divlocus |
Haplotype object creator | haplodata |
Haplotype frequencies | haplofreqs |
Haplotype data simulator | haplosim |
LD plot | ldplot |
Merges two LD matrices | mergemats |