Package: hapsim 0.31
Apostolos Dimitromanolakis
hapsim: Haplotype Data Simulation
Package for haplotype-based genotype simulations. Haplotypes are generated such that their allele frequencies and linkage disequilibrium coefficients match those estimated from an input data set.
Authors:
hapsim_0.31.tar.gz
hapsim_0.31.tar.gz(r-4.5-noble)hapsim_0.31.tar.gz(r-4.4-noble)
hapsim_0.31.tgz(r-4.4-emscripten)hapsim_0.31.tgz(r-4.3-emscripten)
hapsim.pdf |hapsim.html✨
hapsim/json (API)
| # Install 'hapsim' in R: |
| install.packages('hapsim', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- ACEdata - ACE data set
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:a4fd4ef5e7. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 10 2024 |
| R-4.5-linux-x86_64 | OK | Sep 10 2024 |
Exports:.onload.onUnloadallelefreqscheckpdcor2dprimecortocovcovtocordivlocushaplodatahaplofreqshaplosimldplotmakepdmergematsmsesumsqscale
Dependencies:MASS
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ACE data set | ACEdata |
| Estimates allele frequencies | allelefreqs |
| Diversity score | divlocus |
| Haplotype object creator | haplodata |
| Haplotype frequencies | haplofreqs |
| Haplotype data simulator | haplosim |
| LD plot | ldplot |
| Merges two LD matrices | mergemats |