Package: gpcp 0.1.0

Christine Nyaga

gpcp: Genomic Prediction of Cross Performance

This function performs genomic prediction of cross performance using genotype and phenotype data. It processes data in several steps including loading necessary software, converting genotype data, processing phenotype data, fitting mixed models, and predicting cross performance based on weighted marker effects. For more information, see Labroo et al. (2023) <doi:10.1007/s00122-023-04377-z>.

Authors:Marlee Labroo [aut], Christine Nyaga [cre, aut], Lukas Mueller [aut]

gpcp_0.1.0.tar.gz
gpcp_0.1.0.tar.gz(r-4.7-arm64)gpcp_0.1.0.tar.gz(r-4.7-x86_64)gpcp_0.1.0.tar.gz(r-4.6-arm64)gpcp_0.1.0.tar.gz(r-4.6-x86_64)
gpcp_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gpcp/json (API)

# Install 'gpcp' in R:
install.packages('gpcp', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascpp

2.70 score 2 scripts 512 downloads 1 exports 87 dependencies

Last updated from:18d39d6790. Checks:4 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE339
linux-devel-x86_64NOTE339
source / vignettesOK315
linux-release-arm64NOTE341
linux-release-x86_64NOTE354
wasm-releaseOK168

Exports:runGPCP

Dependencies:abindAGHmatrixAnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydplyrenhancerfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngR6RcppRcppArmadilloRcppProgressRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowsnpStatssommerSparseArraySummarizedExperimentsurvivalsystibbletidyselectutf8VariantAnnotationvctrswithrXMLXVectoryamlzoo

Genomic Prediction of Cross Performance with gpcp

Marlee Labroo, Christine Nyaga, Lukas Mueller

Rendered fromgpcp-introduction.Rmdusingknitr::rmarkdownon Jun 12 2026.

Last update: 2024-11-06
Started: 2024-11-06